Gene : AT4G12490 A. thaliana TAIR10
Defline:  (1 of 26) PF14547 - Hydrophobic seed protein (Hydrophob_seed) Genomic Order:  1079
Name:  ? AT4G12490 Secondary Identifier:  ? PAC:19645225
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G12490 0.5kb upstream 0.5kb upstream 1286 true Chr4: 7409621-7410906 Arabidopsis thaliana
AT4G12490 0.5kb upstream 0.5kb upstream 500 false Chr4: 7410407-7410906 Arabidopsis thaliana
AT4G12490 0.5kb downstream 0.5kb downstream 1286 true Chr4: 7409121-7410406 Arabidopsis thaliana
AT4G12490 0.5kb downstream 0.5kb downstream 500 false Chr4: 7409121-7409620 Arabidopsis thaliana
AT4G12490 1.0kb upstream 1.0kb upstream 1786 true Chr4: 7409621-7411406 Arabidopsis thaliana
AT4G12490 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7410407-7411406 Arabidopsis thaliana
AT4G12490 1.0kb downstream 1.0kb downstream 1786 true Chr4: 7408621-7410406 Arabidopsis thaliana
AT4G12490 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7408621-7409620 Arabidopsis thaliana
AT4G12490 2.0kb upstream 2.0kb upstream 2786 true Chr4: 7409621-7412406 Arabidopsis thaliana
AT4G12490 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7410407-7412406 Arabidopsis thaliana
AT4G12490 2.0kb downstream 2.0kb downstream 2786 true Chr4: 7407621-7410406 Arabidopsis thaliana
AT4G12490 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7407621-7409620 Arabidopsis thaliana
AT4G12490 5.0kb upstream 5.0kb upstream 5786 true Chr4: 7409621-7415406 Arabidopsis thaliana
AT4G12490 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7410407-7415406 Arabidopsis thaliana
AT4G12490 5.0kb downstream 5.0kb downstream 5786 true Chr4: 7404621-7410406 Arabidopsis thaliana
AT4G12490 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7404621-7409620 Arabidopsis thaliana
AT4G12490 10.0kb upstream 10.0kb upstream 10786 true Chr4: 7409621-7420406 Arabidopsis thaliana
AT4G12490 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7410407-7420406 Arabidopsis thaliana
AT4G12490 10.0kb downstream 10.0kb downstream 10786 true Chr4: 7399621-7410406 Arabidopsis thaliana
AT4G12490 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7399621-7409620 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381316 5261 Brassicaceae View MSA
123803177 5264 Brassicales-Malvales View MSA
124300307 5266 SBM View MSA
124253928 5268 Malvidae View MSA
124070739 5270 Rosid View MSA
123753397 5271 Pentapetalae View MSA
122797404 5272 Eudicot View MSA
122050019 5273 Angiosperm View MSA
123429239 5275 Viridiplantae View MSA
121311688 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.458        
cufflinks 0.212     Low  
cufflinks 20.772        
cufflinks 0.048     Low  
cufflinks 20.515        
cufflinks 0.019     Low Low

0 Strain