Gene : UPL5 A. thaliana TAIR10
Primary Identifier:  ? AT4G12570 Defline:  (1 of 1) K10591 - E3 ubiquitin-protein ligase NEDD4 (NEDD4, RSP5)
Genomic Order:  1088 Name:  ? AT4G12570
Secondary Identifier:  ? PAC:19647441
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G12570 0.5kb upstream 0.5kb upstream 4225 true Chr4: 7444862-7449086 Arabidopsis thaliana
AT4G12570 0.5kb upstream 0.5kb upstream 500 false Chr4: 7444862-7445361 Arabidopsis thaliana
AT4G12570 0.5kb downstream 0.5kb downstream 4225 true Chr4: 7445362-7449586 Arabidopsis thaliana
AT4G12570 0.5kb downstream 0.5kb downstream 500 false Chr4: 7449087-7449586 Arabidopsis thaliana
AT4G12570 1.0kb upstream 1.0kb upstream 4725 true Chr4: 7444362-7449086 Arabidopsis thaliana
AT4G12570 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7444362-7445361 Arabidopsis thaliana
AT4G12570 1.0kb downstream 1.0kb downstream 4725 true Chr4: 7445362-7450086 Arabidopsis thaliana
AT4G12570 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7449087-7450086 Arabidopsis thaliana
AT4G12570 2.0kb upstream 2.0kb upstream 5725 true Chr4: 7443362-7449086 Arabidopsis thaliana
AT4G12570 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7443362-7445361 Arabidopsis thaliana
AT4G12570 2.0kb downstream 2.0kb downstream 5725 true Chr4: 7445362-7451086 Arabidopsis thaliana
AT4G12570 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7449087-7451086 Arabidopsis thaliana
AT4G12570 5.0kb upstream 5.0kb upstream 8725 true Chr4: 7440362-7449086 Arabidopsis thaliana
AT4G12570 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7440362-7445361 Arabidopsis thaliana
AT4G12570 5.0kb downstream 5.0kb downstream 8725 true Chr4: 7445362-7454086 Arabidopsis thaliana
AT4G12570 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7449087-7454086 Arabidopsis thaliana
AT4G12570 10.0kb upstream 10.0kb upstream 13725 true Chr4: 7435362-7449086 Arabidopsis thaliana
AT4G12570 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7435362-7445361 Arabidopsis thaliana
AT4G12570 10.0kb downstream 10.0kb downstream 13725 true Chr4: 7445362-7459086 Arabidopsis thaliana
AT4G12570 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7449087-7459086 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374842 5261 Brassicaceae View MSA
123835538 5264 Brassicales-Malvales View MSA
124343855 5266 SBM View MSA
124239492 5268 Malvidae View MSA
124063401 5270 Rosid View MSA
123749847 5271 Pentapetalae View MSA
122786985 5272 Eudicot View MSA
122048097 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121348188 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.357        
cufflinks 13.177       High
cufflinks 7.897       Low
cufflinks 14.321       High
cufflinks 9.507        
cufflinks 9.793        

0 Strain