Gene : AT4G12340 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21588 - COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6 Genomic Order:  1062
Name:  ? AT4G12340 Secondary Identifier:  ? PAC:19645298
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G12340 0.5kb upstream 0.5kb upstream 1700 true Chr4: 7321278-7322977 Arabidopsis thaliana
AT4G12340 0.5kb upstream 0.5kb upstream 500 false Chr4: 7322478-7322977 Arabidopsis thaliana
AT4G12340 0.5kb downstream 0.5kb downstream 1700 true Chr4: 7320778-7322477 Arabidopsis thaliana
AT4G12340 0.5kb downstream 0.5kb downstream 500 false Chr4: 7320778-7321277 Arabidopsis thaliana
AT4G12340 1.0kb upstream 1.0kb upstream 2200 true Chr4: 7321278-7323477 Arabidopsis thaliana
AT4G12340 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7322478-7323477 Arabidopsis thaliana
AT4G12340 1.0kb downstream 1.0kb downstream 2200 true Chr4: 7320278-7322477 Arabidopsis thaliana
AT4G12340 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7320278-7321277 Arabidopsis thaliana
AT4G12340 2.0kb upstream 2.0kb upstream 3200 true Chr4: 7321278-7324477 Arabidopsis thaliana
AT4G12340 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7322478-7324477 Arabidopsis thaliana
AT4G12340 2.0kb downstream 2.0kb downstream 3200 true Chr4: 7319278-7322477 Arabidopsis thaliana
AT4G12340 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7319278-7321277 Arabidopsis thaliana
AT4G12340 5.0kb upstream 5.0kb upstream 6200 true Chr4: 7321278-7327477 Arabidopsis thaliana
AT4G12340 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7322478-7327477 Arabidopsis thaliana
AT4G12340 5.0kb downstream 5.0kb downstream 6200 true Chr4: 7316278-7322477 Arabidopsis thaliana
AT4G12340 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7316278-7321277 Arabidopsis thaliana
AT4G12340 10.0kb upstream 10.0kb upstream 11200 true Chr4: 7321278-7332477 Arabidopsis thaliana
AT4G12340 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7322478-7332477 Arabidopsis thaliana
AT4G12340 10.0kb downstream 10.0kb downstream 11200 true Chr4: 7311278-7322477 Arabidopsis thaliana
AT4G12340 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7311278-7321277 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378163 5261 Brassicaceae View MSA
123836037 5264 Brassicales-Malvales View MSA
124337422 5266 SBM View MSA
124250058 5268 Malvidae View MSA
124066354 5270 Rosid View MSA
123739449 5271 Pentapetalae View MSA
122789520 5272 Eudicot View MSA
122043061 5273 Angiosperm View MSA
121347219 5274 Embryophyte View MSA
123425883 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.394        
cufflinks 28.414       High
cufflinks 22.691        
cufflinks 27.758        
cufflinks 21.452       Low
cufflinks 24.429        

0 Strain