Gene : CCT2 A. thaliana TAIR10
Primary Identifier:  ? AT4G15130 Defline:  (1 of 2) 2.7.7.15 - Choline-phosphate cytidylyltransferase / Phosphorylcholine transferase
Genomic Order:  1398 Name:  ? AT4G15130
Secondary Identifier:  ? PAC:19645151
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3561 Arabidopsis thaliana pathologic  
Athaliana PWY3O-450 Arabidopsis thaliana pathologic  
Athaliana PWY4FS-2 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G15130 0.5kb upstream 0.5kb upstream 2416 true Chr4: 8637166-8639581 Arabidopsis thaliana
AT4G15130 0.5kb upstream 0.5kb upstream 500 false Chr4: 8637166-8637665 Arabidopsis thaliana
AT4G15130 0.5kb downstream 0.5kb downstream 2416 true Chr4: 8637666-8640081 Arabidopsis thaliana
AT4G15130 0.5kb downstream 0.5kb downstream 500 false Chr4: 8639582-8640081 Arabidopsis thaliana
AT4G15130 1.0kb upstream 1.0kb upstream 2916 true Chr4: 8636666-8639581 Arabidopsis thaliana
AT4G15130 1.0kb upstream 1.0kb upstream 1000 false Chr4: 8636666-8637665 Arabidopsis thaliana
AT4G15130 1.0kb downstream 1.0kb downstream 2916 true Chr4: 8637666-8640581 Arabidopsis thaliana
AT4G15130 1.0kb downstream 1.0kb downstream 1000 false Chr4: 8639582-8640581 Arabidopsis thaliana
AT4G15130 2.0kb upstream 2.0kb upstream 3916 true Chr4: 8635666-8639581 Arabidopsis thaliana
AT4G15130 2.0kb upstream 2.0kb upstream 2000 false Chr4: 8635666-8637665 Arabidopsis thaliana
AT4G15130 2.0kb downstream 2.0kb downstream 3916 true Chr4: 8637666-8641581 Arabidopsis thaliana
AT4G15130 2.0kb downstream 2.0kb downstream 2000 false Chr4: 8639582-8641581 Arabidopsis thaliana
AT4G15130 5.0kb upstream 5.0kb upstream 6916 true Chr4: 8632666-8639581 Arabidopsis thaliana
AT4G15130 5.0kb upstream 5.0kb upstream 5000 false Chr4: 8632666-8637665 Arabidopsis thaliana
AT4G15130 5.0kb downstream 5.0kb downstream 6916 true Chr4: 8637666-8644581 Arabidopsis thaliana
AT4G15130 5.0kb downstream 5.0kb downstream 5000 false Chr4: 8639582-8644581 Arabidopsis thaliana
AT4G15130 10.0kb upstream 10.0kb upstream 11916 true Chr4: 8627666-8639581 Arabidopsis thaliana
AT4G15130 10.0kb upstream 10.0kb upstream 10000 false Chr4: 8627666-8637665 Arabidopsis thaliana
AT4G15130 10.0kb downstream 10.0kb downstream 11916 true Chr4: 8637666-8649581 Arabidopsis thaliana
AT4G15130 10.0kb downstream 10.0kb downstream 10000 false Chr4: 8639582-8649581 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373110 5261 Brassicaceae View MSA
123800495 5264 Brassicales-Malvales View MSA
124297906 5266 SBM View MSA
124149683 5268 Malvidae View MSA
124069985 5270 Rosid View MSA
123749333 5271 Pentapetalae View MSA
122792398 5272 Eudicot View MSA
122047197 5273 Angiosperm View MSA
121348751 5274 Embryophyte View MSA
123428717 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.723        
cufflinks 8.704       Low
cufflinks 10.616        
cufflinks 11.436        
cufflinks 11.549        
cufflinks 8.672       Low

0 Strain