Gene : AT4G16800 A. thaliana TAIR10
Defline:  (1 of 1) 4.2.1.18 - Methylglutaconyl-CoA hydratase Genomic Order:  1600
Name:  ? AT4G16800 Secondary Identifier:  ? PAC:19646750
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana LEU-DEG2-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16800 0.5kb upstream 0.5kb upstream 2724 true Chr4: 9454816-9457539 Arabidopsis thaliana
AT4G16800 0.5kb upstream 0.5kb upstream 500 false Chr4: 9457040-9457539 Arabidopsis thaliana
AT4G16800 0.5kb downstream 0.5kb downstream 2724 true Chr4: 9454316-9457039 Arabidopsis thaliana
AT4G16800 0.5kb downstream 0.5kb downstream 500 false Chr4: 9454316-9454815 Arabidopsis thaliana
AT4G16800 1.0kb upstream 1.0kb upstream 3224 true Chr4: 9454816-9458039 Arabidopsis thaliana
AT4G16800 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9457040-9458039 Arabidopsis thaliana
AT4G16800 1.0kb downstream 1.0kb downstream 3224 true Chr4: 9453816-9457039 Arabidopsis thaliana
AT4G16800 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9453816-9454815 Arabidopsis thaliana
AT4G16800 2.0kb upstream 2.0kb upstream 4224 true Chr4: 9454816-9459039 Arabidopsis thaliana
AT4G16800 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9457040-9459039 Arabidopsis thaliana
AT4G16800 2.0kb downstream 2.0kb downstream 4224 true Chr4: 9452816-9457039 Arabidopsis thaliana
AT4G16800 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9452816-9454815 Arabidopsis thaliana
AT4G16800 5.0kb upstream 5.0kb upstream 7224 true Chr4: 9454816-9462039 Arabidopsis thaliana
AT4G16800 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9457040-9462039 Arabidopsis thaliana
AT4G16800 5.0kb downstream 5.0kb downstream 7224 true Chr4: 9449816-9457039 Arabidopsis thaliana
AT4G16800 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9449816-9454815 Arabidopsis thaliana
AT4G16800 10.0kb upstream 10.0kb upstream 12224 true Chr4: 9454816-9467039 Arabidopsis thaliana
AT4G16800 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9457040-9467039 Arabidopsis thaliana
AT4G16800 10.0kb downstream 10.0kb downstream 12224 true Chr4: 9444816-9457039 Arabidopsis thaliana
AT4G16800 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9444816-9454815 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365847 5261 Brassicaceae View MSA
123834998 5264 Brassicales-Malvales View MSA
124321989 5266 SBM View MSA
124240745 5268 Malvidae View MSA
124069005 5270 Rosid View MSA
123739015 5271 Pentapetalae View MSA
122790936 5272 Eudicot View MSA
122045797 5273 Angiosperm View MSA
121351751 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.501       Low
cufflinks 6.159       High
cufflinks 4.925        
cufflinks 5.191        
cufflinks 4.538        
cufflinks 6.051       High

0 Strain