Gene : TPS03 A. thaliana TAIR10
Primary Identifier:  ? AT4G16740 Defline:  (1 of 1) 4.2.3.105//4.2.3.46 - Tricyclene synthase // Alpha-farnesene synthase / AFS1
Genomic Order:  1592 Name:  ? AT4G16740
Secondary Identifier:  ? PAC:19647570
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5725 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16740 0.5kb upstream 0.5kb upstream 3610 true Chr4: 9407268-9410877 Arabidopsis thaliana
AT4G16740 0.5kb upstream 0.5kb upstream 500 false Chr4: 9407268-9407767 Arabidopsis thaliana
AT4G16740 0.5kb downstream 0.5kb downstream 3610 true Chr4: 9407768-9411377 Arabidopsis thaliana
AT4G16740 0.5kb downstream 0.5kb downstream 500 false Chr4: 9410878-9411377 Arabidopsis thaliana
AT4G16740 1.0kb upstream 1.0kb upstream 4110 true Chr4: 9406768-9410877 Arabidopsis thaliana
AT4G16740 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9406768-9407767 Arabidopsis thaliana
AT4G16740 1.0kb downstream 1.0kb downstream 4110 true Chr4: 9407768-9411877 Arabidopsis thaliana
AT4G16740 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9410878-9411877 Arabidopsis thaliana
AT4G16740 2.0kb upstream 2.0kb upstream 5110 true Chr4: 9405768-9410877 Arabidopsis thaliana
AT4G16740 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9405768-9407767 Arabidopsis thaliana
AT4G16740 2.0kb downstream 2.0kb downstream 5110 true Chr4: 9407768-9412877 Arabidopsis thaliana
AT4G16740 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9410878-9412877 Arabidopsis thaliana
AT4G16740 5.0kb upstream 5.0kb upstream 8110 true Chr4: 9402768-9410877 Arabidopsis thaliana
AT4G16740 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9402768-9407767 Arabidopsis thaliana
AT4G16740 5.0kb downstream 5.0kb downstream 8110 true Chr4: 9407768-9415877 Arabidopsis thaliana
AT4G16740 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9410878-9415877 Arabidopsis thaliana
AT4G16740 10.0kb upstream 10.0kb upstream 13110 true Chr4: 9397768-9410877 Arabidopsis thaliana
AT4G16740 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9397768-9407767 Arabidopsis thaliana
AT4G16740 10.0kb downstream 10.0kb downstream 13110 true Chr4: 9407768-9420877 Arabidopsis thaliana
AT4G16740 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9410878-9420877 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367932 5261 Brassicaceae View MSA
123799450 5264 Brassicales-Malvales View MSA
124348177 5266 SBM View MSA
124254018 5268 Malvidae View MSA
124074530 5270 Rosid View MSA
123753426 5271 Pentapetalae View MSA
122797901 5272 Eudicot View MSA
122051661 5273 Angiosperm View MSA
121351720 5274 Embryophyte View MSA
123382290 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.183     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.214        
cufflinks 0.074     Low  
cufflinks 3.935       High
cufflinks 0.003     Low Low

0 Strain