Gene : AT4G16680 A. thaliana TAIR10
Defline:  (1 of 1) PTHR18934//PTHR18934:SF83 - ATP-DEPENDENT RNA HELICASE // PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX16-RELATED Genomic Order:  1585
Name:  ? AT4G16680 Secondary Identifier:  ? PAC:19646436
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16680 0.5kb upstream 0.5kb upstream 3882 true Chr4: 9387393-9391274 Arabidopsis thaliana
AT4G16680 0.5kb upstream 0.5kb upstream 500 false Chr4: 9390775-9391274 Arabidopsis thaliana
AT4G16680 0.5kb downstream 0.5kb downstream 3882 true Chr4: 9386893-9390774 Arabidopsis thaliana
AT4G16680 0.5kb downstream 0.5kb downstream 500 false Chr4: 9386893-9387392 Arabidopsis thaliana
AT4G16680 1.0kb upstream 1.0kb upstream 4382 true Chr4: 9387393-9391774 Arabidopsis thaliana
AT4G16680 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9390775-9391774 Arabidopsis thaliana
AT4G16680 1.0kb downstream 1.0kb downstream 4382 true Chr4: 9386393-9390774 Arabidopsis thaliana
AT4G16680 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9386393-9387392 Arabidopsis thaliana
AT4G16680 2.0kb upstream 2.0kb upstream 5382 true Chr4: 9387393-9392774 Arabidopsis thaliana
AT4G16680 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9390775-9392774 Arabidopsis thaliana
AT4G16680 2.0kb downstream 2.0kb downstream 5382 true Chr4: 9385393-9390774 Arabidopsis thaliana
AT4G16680 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9385393-9387392 Arabidopsis thaliana
AT4G16680 5.0kb upstream 5.0kb upstream 8382 true Chr4: 9387393-9395774 Arabidopsis thaliana
AT4G16680 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9390775-9395774 Arabidopsis thaliana
AT4G16680 5.0kb downstream 5.0kb downstream 8382 true Chr4: 9382393-9390774 Arabidopsis thaliana
AT4G16680 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9382393-9387392 Arabidopsis thaliana
AT4G16680 10.0kb upstream 10.0kb upstream 13382 true Chr4: 9387393-9400774 Arabidopsis thaliana
AT4G16680 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9390775-9400774 Arabidopsis thaliana
AT4G16680 10.0kb downstream 10.0kb downstream 13382 true Chr4: 9377393-9390774 Arabidopsis thaliana
AT4G16680 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9377393-9387392 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330592 5261 Brassicaceae Singleton cluster - no MSA
123771826 5264 Brassicales-Malvales Singleton cluster - no MSA
124270350 5266 SBM Singleton cluster - no MSA
124126432 5268 Malvidae Singleton cluster - no MSA
123855343 5270 Rosid Singleton cluster - no MSA
123441329 5271 Pentapetalae Singleton cluster - no MSA
122476914 5272 Eudicot Singleton cluster - no MSA
122047239 5273 Angiosperm View MSA
121347045 5274 Embryophyte View MSA
123427564 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.225       Low
cufflinks 2.854        
cufflinks 3.88        
cufflinks 3.596        
cufflinks 3.802        
cufflinks 1.773        

0 Strain