Gene : AT4G16390 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1549
Name:  ? AT4G16390 Secondary Identifier:  ? PAC:19644921
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16390 0.5kb upstream 0.5kb upstream 2820 true Chr4: 9257458-9260277 Arabidopsis thaliana
AT4G16390 0.5kb upstream 0.5kb upstream 500 false Chr4: 9257458-9257957 Arabidopsis thaliana
AT4G16390 0.5kb downstream 0.5kb downstream 2820 true Chr4: 9257958-9260777 Arabidopsis thaliana
AT4G16390 0.5kb downstream 0.5kb downstream 500 false Chr4: 9260278-9260777 Arabidopsis thaliana
AT4G16390 1.0kb upstream 1.0kb upstream 3320 true Chr4: 9256958-9260277 Arabidopsis thaliana
AT4G16390 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9256958-9257957 Arabidopsis thaliana
AT4G16390 1.0kb downstream 1.0kb downstream 3320 true Chr4: 9257958-9261277 Arabidopsis thaliana
AT4G16390 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9260278-9261277 Arabidopsis thaliana
AT4G16390 2.0kb upstream 2.0kb upstream 4320 true Chr4: 9255958-9260277 Arabidopsis thaliana
AT4G16390 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9255958-9257957 Arabidopsis thaliana
AT4G16390 2.0kb downstream 2.0kb downstream 4320 true Chr4: 9257958-9262277 Arabidopsis thaliana
AT4G16390 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9260278-9262277 Arabidopsis thaliana
AT4G16390 5.0kb upstream 5.0kb upstream 7320 true Chr4: 9252958-9260277 Arabidopsis thaliana
AT4G16390 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9252958-9257957 Arabidopsis thaliana
AT4G16390 5.0kb downstream 5.0kb downstream 7320 true Chr4: 9257958-9265277 Arabidopsis thaliana
AT4G16390 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9260278-9265277 Arabidopsis thaliana
AT4G16390 10.0kb upstream 10.0kb upstream 12320 true Chr4: 9247958-9260277 Arabidopsis thaliana
AT4G16390 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9247958-9257957 Arabidopsis thaliana
AT4G16390 10.0kb downstream 10.0kb downstream 12320 true Chr4: 9257958-9270277 Arabidopsis thaliana
AT4G16390 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9260278-9270277 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372528 5261 Brassicaceae View MSA
123839281 5264 Brassicales-Malvales View MSA
124340689 5266 SBM View MSA
124240130 5268 Malvidae View MSA
124064149 5270 Rosid View MSA
123753301 5271 Pentapetalae View MSA
122789942 5272 Eudicot View MSA
122043539 5273 Angiosperm View MSA
121344903 5274 Embryophyte View MSA
123380125 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.225     High High
cufflinks 3.425       Low
cufflinks 34.516     High High
cufflinks 4.664        
cufflinks 21.374        
cufflinks 4.183        

0 Strain