Gene : AT4G16200 A. thaliana TAIR10
Defline:  (1 of 7) K12825 - splicing factor 3A subunit 1 (SF3A1, SAP114) Genomic Order:  1530
Name:  ? AT4G16200 Secondary Identifier:  ? PAC:19646709
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16200 0.5kb upstream 0.5kb upstream 1417 true Chr4: 9175149-9176565 Arabidopsis thaliana
AT4G16200 0.5kb upstream 0.5kb upstream 500 false Chr4: 9175149-9175648 Arabidopsis thaliana
AT4G16200 0.5kb downstream 0.5kb downstream 1417 true Chr4: 9175649-9177065 Arabidopsis thaliana
AT4G16200 0.5kb downstream 0.5kb downstream 500 false Chr4: 9176566-9177065 Arabidopsis thaliana
AT4G16200 1.0kb upstream 1.0kb upstream 1917 true Chr4: 9174649-9176565 Arabidopsis thaliana
AT4G16200 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9174649-9175648 Arabidopsis thaliana
AT4G16200 1.0kb downstream 1.0kb downstream 1917 true Chr4: 9175649-9177565 Arabidopsis thaliana
AT4G16200 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9176566-9177565 Arabidopsis thaliana
AT4G16200 2.0kb upstream 2.0kb upstream 2917 true Chr4: 9173649-9176565 Arabidopsis thaliana
AT4G16200 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9173649-9175648 Arabidopsis thaliana
AT4G16200 2.0kb downstream 2.0kb downstream 2917 true Chr4: 9175649-9178565 Arabidopsis thaliana
AT4G16200 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9176566-9178565 Arabidopsis thaliana
AT4G16200 5.0kb upstream 5.0kb upstream 5917 true Chr4: 9170649-9176565 Arabidopsis thaliana
AT4G16200 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9170649-9175648 Arabidopsis thaliana
AT4G16200 5.0kb downstream 5.0kb downstream 5917 true Chr4: 9175649-9181565 Arabidopsis thaliana
AT4G16200 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9176566-9181565 Arabidopsis thaliana
AT4G16200 10.0kb upstream 10.0kb upstream 10917 true Chr4: 9165649-9176565 Arabidopsis thaliana
AT4G16200 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9165649-9175648 Arabidopsis thaliana
AT4G16200 10.0kb downstream 10.0kb downstream 10917 true Chr4: 9175649-9186565 Arabidopsis thaliana
AT4G16200 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9176566-9186565 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121579359 5273 Angiosperm View MSA
122330621 5261 Brassicaceae Singleton cluster - no MSA
123771852 5264 Brassicales-Malvales Singleton cluster - no MSA
124270376 5266 SBM Singleton cluster - no MSA
124249785 5268 Malvidae View MSA
123952422 5270 Rosid View MSA
123530217 5271 Pentapetalae View MSA
122565187 5272 Eudicot View MSA
120851822 5274 Embryophyte View MSA
122892988 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.086     Low High
cufflinks 0.035     Low  
cufflinks 0.034     Low  

0 Strain