Gene : CLA1 A. thaliana TAIR10
Primary Identifier:  ? AT4G15560 Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase
Genomic Order:  1449 Name:  ? AT4G15560
Secondary Identifier:  ? PAC:19645401
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7560 Arabidopsis thaliana pathologic  

Genomics

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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G15560 0.5kb upstream 0.5kb upstream 4159 true Chr4: 8883407-8887565 Arabidopsis thaliana
AT4G15560 0.5kb upstream 0.5kb upstream 500 false Chr4: 8883407-8883906 Arabidopsis thaliana
AT4G15560 0.5kb downstream 0.5kb downstream 4159 true Chr4: 8883907-8888065 Arabidopsis thaliana
AT4G15560 0.5kb downstream 0.5kb downstream 500 false Chr4: 8887566-8888065 Arabidopsis thaliana
AT4G15560 1.0kb upstream 1.0kb upstream 4659 true Chr4: 8882907-8887565 Arabidopsis thaliana
AT4G15560 1.0kb upstream 1.0kb upstream 1000 false Chr4: 8882907-8883906 Arabidopsis thaliana
AT4G15560 1.0kb downstream 1.0kb downstream 4659 true Chr4: 8883907-8888565 Arabidopsis thaliana
AT4G15560 1.0kb downstream 1.0kb downstream 1000 false Chr4: 8887566-8888565 Arabidopsis thaliana
AT4G15560 2.0kb upstream 2.0kb upstream 5659 true Chr4: 8881907-8887565 Arabidopsis thaliana
AT4G15560 2.0kb upstream 2.0kb upstream 2000 false Chr4: 8881907-8883906 Arabidopsis thaliana
AT4G15560 2.0kb downstream 2.0kb downstream 5659 true Chr4: 8883907-8889565 Arabidopsis thaliana
AT4G15560 2.0kb downstream 2.0kb downstream 2000 false Chr4: 8887566-8889565 Arabidopsis thaliana
AT4G15560 5.0kb upstream 5.0kb upstream 8659 true Chr4: 8878907-8887565 Arabidopsis thaliana
AT4G15560 5.0kb upstream 5.0kb upstream 5000 false Chr4: 8878907-8883906 Arabidopsis thaliana
AT4G15560 5.0kb downstream 5.0kb downstream 8659 true Chr4: 8883907-8892565 Arabidopsis thaliana
AT4G15560 5.0kb downstream 5.0kb downstream 5000 false Chr4: 8887566-8892565 Arabidopsis thaliana
AT4G15560 10.0kb upstream 10.0kb upstream 13659 true Chr4: 8873907-8887565 Arabidopsis thaliana
AT4G15560 10.0kb upstream 10.0kb upstream 10000 false Chr4: 8873907-8883906 Arabidopsis thaliana
AT4G15560 10.0kb downstream 10.0kb downstream 13659 true Chr4: 8883907-8897565 Arabidopsis thaliana
AT4G15560 10.0kb downstream 10.0kb downstream 10000 false Chr4: 8887566-8897565 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369320 5261 Brassicaceae View MSA
123830613 5264 Brassicales-Malvales View MSA
124343663 5266 SBM View MSA
124239163 5268 Malvidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 112.119     High  
cufflinks 21.935        
cufflinks 129.083     High  
cufflinks 23.735        
cufflinks 173.062     High High
cufflinks 18.237       Low

0 Strain