Gene : SNI1 A. thaliana TAIR10
Primary Identifier:  ? AT4G18470 Defline:  negative regulator of systemic acquired resistance (SNI1)
Genomic Order:  1785 Name:  ? AT4G18470
Secondary Identifier:  ? PAC:19647057
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G18470 0.5kb upstream 0.5kb upstream 3254 true Chr4: 10192409-10195662 Arabidopsis thaliana
AT4G18470 0.5kb upstream 0.5kb upstream 500 false Chr4: 10192409-10192908 Arabidopsis thaliana
AT4G18470 0.5kb downstream 0.5kb downstream 3254 true Chr4: 10192909-10196162 Arabidopsis thaliana
AT4G18470 0.5kb downstream 0.5kb downstream 500 false Chr4: 10195663-10196162 Arabidopsis thaliana
AT4G18470 1.0kb upstream 1.0kb upstream 3754 true Chr4: 10191909-10195662 Arabidopsis thaliana
AT4G18470 1.0kb upstream 1.0kb upstream 1000 false Chr4: 10191909-10192908 Arabidopsis thaliana
AT4G18470 1.0kb downstream 1.0kb downstream 3754 true Chr4: 10192909-10196662 Arabidopsis thaliana
AT4G18470 1.0kb downstream 1.0kb downstream 1000 false Chr4: 10195663-10196662 Arabidopsis thaliana
AT4G18470 2.0kb upstream 2.0kb upstream 4754 true Chr4: 10190909-10195662 Arabidopsis thaliana
AT4G18470 2.0kb upstream 2.0kb upstream 2000 false Chr4: 10190909-10192908 Arabidopsis thaliana
AT4G18470 2.0kb downstream 2.0kb downstream 4754 true Chr4: 10192909-10197662 Arabidopsis thaliana
AT4G18470 2.0kb downstream 2.0kb downstream 2000 false Chr4: 10195663-10197662 Arabidopsis thaliana
AT4G18470 5.0kb upstream 5.0kb upstream 7754 true Chr4: 10187909-10195662 Arabidopsis thaliana
AT4G18470 5.0kb upstream 5.0kb upstream 5000 false Chr4: 10187909-10192908 Arabidopsis thaliana
AT4G18470 5.0kb downstream 5.0kb downstream 7754 true Chr4: 10192909-10200662 Arabidopsis thaliana
AT4G18470 5.0kb downstream 5.0kb downstream 5000 false Chr4: 10195663-10200662 Arabidopsis thaliana
AT4G18470 10.0kb upstream 10.0kb upstream 12754 true Chr4: 10182909-10195662 Arabidopsis thaliana
AT4G18470 10.0kb upstream 10.0kb upstream 10000 false Chr4: 10182909-10192908 Arabidopsis thaliana
AT4G18470 10.0kb downstream 10.0kb downstream 12754 true Chr4: 10192909-10205662 Arabidopsis thaliana
AT4G18470 10.0kb downstream 10.0kb downstream 10000 false Chr4: 10195663-10205662 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361351 5261 Brassicaceae View MSA
123832260 5264 Brassicales-Malvales View MSA
124344680 5266 SBM View MSA
124243707 5268 Malvidae View MSA
124066020 5270 Rosid View MSA
123739263 5271 Pentapetalae View MSA
122793413 5272 Eudicot View MSA
122043797 5273 Angiosperm View MSA
121348226 5274 Embryophyte View MSA
123380780 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.021        
cufflinks 1.631        
cufflinks 0.673        
cufflinks 1.375        
cufflinks 0.462       Low
cufflinks 1.459        

0 Strain