Gene : AT4G17880 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11514//PTHR11514:SF43 - MYC // TRANSCRIPTION FACTOR MYC3-RELATED Genomic Order:  1717
Name:  ? AT4G17880 Secondary Identifier:  ? PAC:19645230
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G17880 0.5kb upstream 0.5kb upstream 2721 true Chr4: 9933366-9936086 Arabidopsis thaliana
AT4G17880 0.5kb upstream 0.5kb upstream 500 false Chr4: 9935587-9936086 Arabidopsis thaliana
AT4G17880 0.5kb downstream 0.5kb downstream 2721 true Chr4: 9932866-9935586 Arabidopsis thaliana
AT4G17880 0.5kb downstream 0.5kb downstream 500 false Chr4: 9932866-9933365 Arabidopsis thaliana
AT4G17880 1.0kb upstream 1.0kb upstream 3221 true Chr4: 9933366-9936586 Arabidopsis thaliana
AT4G17880 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9935587-9936586 Arabidopsis thaliana
AT4G17880 1.0kb downstream 1.0kb downstream 3221 true Chr4: 9932366-9935586 Arabidopsis thaliana
AT4G17880 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9932366-9933365 Arabidopsis thaliana
AT4G17880 2.0kb upstream 2.0kb upstream 4221 true Chr4: 9933366-9937586 Arabidopsis thaliana
AT4G17880 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9935587-9937586 Arabidopsis thaliana
AT4G17880 2.0kb downstream 2.0kb downstream 4221 true Chr4: 9931366-9935586 Arabidopsis thaliana
AT4G17880 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9931366-9933365 Arabidopsis thaliana
AT4G17880 5.0kb upstream 5.0kb upstream 7221 true Chr4: 9933366-9940586 Arabidopsis thaliana
AT4G17880 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9935587-9940586 Arabidopsis thaliana
AT4G17880 5.0kb downstream 5.0kb downstream 7221 true Chr4: 9928366-9935586 Arabidopsis thaliana
AT4G17880 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9928366-9933365 Arabidopsis thaliana
AT4G17880 10.0kb upstream 10.0kb upstream 12221 true Chr4: 9933366-9945586 Arabidopsis thaliana
AT4G17880 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9935587-9945586 Arabidopsis thaliana
AT4G17880 10.0kb downstream 10.0kb downstream 12221 true Chr4: 9923366-9935586 Arabidopsis thaliana
AT4G17880 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9923366-9933365 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374845 5261 Brassicaceae View MSA
123836431 5264 Brassicales-Malvales View MSA
124322162 5266 SBM View MSA
124169090 5268 Malvidae View MSA
124072195 5270 Rosid View MSA
123752263 5271 Pentapetalae View MSA
122797148 5272 Eudicot View MSA
122048135 5273 Angiosperm View MSA
121351644 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.21        
cufflinks 24.093       High
cufflinks 8.146        
cufflinks 22.425        
cufflinks 5.668       Low
cufflinks 17.789        

0 Strain