Gene : UBP20 A. thaliana TAIR10
Primary Identifier:  ? AT4G17895 Defline:  (1 of 2) PTHR24006//PTHR24006:SF451 - FAMILY NOT NAMED // UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Genomic Order:  1719 Name:  ? AT4G17895
Secondary Identifier:  ? PAC:19644430
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G17895 0.5kb upstream 0.5kb upstream 3578 true Chr4: 9939195-9942772 Arabidopsis thaliana
AT4G17895 0.5kb upstream 0.5kb upstream 500 false Chr4: 9939195-9939694 Arabidopsis thaliana
AT4G17895 0.5kb downstream 0.5kb downstream 3578 true Chr4: 9939695-9943272 Arabidopsis thaliana
AT4G17895 0.5kb downstream 0.5kb downstream 500 false Chr4: 9942773-9943272 Arabidopsis thaliana
AT4G17895 1.0kb upstream 1.0kb upstream 4078 true Chr4: 9938695-9942772 Arabidopsis thaliana
AT4G17895 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9938695-9939694 Arabidopsis thaliana
AT4G17895 1.0kb downstream 1.0kb downstream 4078 true Chr4: 9939695-9943772 Arabidopsis thaliana
AT4G17895 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9942773-9943772 Arabidopsis thaliana
AT4G17895 2.0kb upstream 2.0kb upstream 5078 true Chr4: 9937695-9942772 Arabidopsis thaliana
AT4G17895 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9937695-9939694 Arabidopsis thaliana
AT4G17895 2.0kb downstream 2.0kb downstream 5078 true Chr4: 9939695-9944772 Arabidopsis thaliana
AT4G17895 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9942773-9944772 Arabidopsis thaliana
AT4G17895 5.0kb upstream 5.0kb upstream 8078 true Chr4: 9934695-9942772 Arabidopsis thaliana
AT4G17895 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9934695-9939694 Arabidopsis thaliana
AT4G17895 5.0kb downstream 5.0kb downstream 8078 true Chr4: 9939695-9947772 Arabidopsis thaliana
AT4G17895 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9942773-9947772 Arabidopsis thaliana
AT4G17895 10.0kb upstream 10.0kb upstream 13078 true Chr4: 9929695-9942772 Arabidopsis thaliana
AT4G17895 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9929695-9939694 Arabidopsis thaliana
AT4G17895 10.0kb downstream 10.0kb downstream 13078 true Chr4: 9939695-9952772 Arabidopsis thaliana
AT4G17895 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9942773-9952772 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367576 5261 Brassicaceae View MSA
123841220 5264 Brassicales-Malvales View MSA
124350216 5266 SBM View MSA
124241498 5268 Malvidae View MSA
124064624 5270 Rosid View MSA
123747010 5271 Pentapetalae View MSA
122793778 5272 Eudicot View MSA
122046494 5273 Angiosperm View MSA
121350818 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.275        
cufflinks 7.824        
cufflinks 3.067       Low
cufflinks 9.452       High
cufflinks 3.616        
cufflinks 8.445        

0 Strain