Gene : AT4G17900 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31065:SF2 - PLATZ TRANSCRIPTION FACTOR DOMAIN-CONTAINING PROTEIN Genomic Order:  1720
Name:  ? AT4G17900 Secondary Identifier:  ? PAC:19647346
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G17900 0.5kb upstream 0.5kb upstream 2709 true Chr4: 9945370-9948078 Arabidopsis thaliana
AT4G17900 0.5kb upstream 0.5kb upstream 500 false Chr4: 9945370-9945869 Arabidopsis thaliana
AT4G17900 0.5kb downstream 0.5kb downstream 2709 true Chr4: 9945870-9948578 Arabidopsis thaliana
AT4G17900 0.5kb downstream 0.5kb downstream 500 false Chr4: 9948079-9948578 Arabidopsis thaliana
AT4G17900 1.0kb upstream 1.0kb upstream 3209 true Chr4: 9944870-9948078 Arabidopsis thaliana
AT4G17900 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9944870-9945869 Arabidopsis thaliana
AT4G17900 1.0kb downstream 1.0kb downstream 3209 true Chr4: 9945870-9949078 Arabidopsis thaliana
AT4G17900 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9948079-9949078 Arabidopsis thaliana
AT4G17900 2.0kb upstream 2.0kb upstream 4209 true Chr4: 9943870-9948078 Arabidopsis thaliana
AT4G17900 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9943870-9945869 Arabidopsis thaliana
AT4G17900 2.0kb downstream 2.0kb downstream 4209 true Chr4: 9945870-9950078 Arabidopsis thaliana
AT4G17900 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9948079-9950078 Arabidopsis thaliana
AT4G17900 5.0kb upstream 5.0kb upstream 7209 true Chr4: 9940870-9948078 Arabidopsis thaliana
AT4G17900 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9940870-9945869 Arabidopsis thaliana
AT4G17900 5.0kb downstream 5.0kb downstream 7209 true Chr4: 9945870-9953078 Arabidopsis thaliana
AT4G17900 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9948079-9953078 Arabidopsis thaliana
AT4G17900 10.0kb upstream 10.0kb upstream 12209 true Chr4: 9935870-9948078 Arabidopsis thaliana
AT4G17900 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9935870-9945869 Arabidopsis thaliana
AT4G17900 10.0kb downstream 10.0kb downstream 12209 true Chr4: 9945870-9958078 Arabidopsis thaliana
AT4G17900 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9948079-9958078 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365660 5261 Brassicaceae View MSA
123835434 5264 Brassicales-Malvales View MSA
124322050 5266 SBM View MSA
124253177 5268 Malvidae View MSA
124073027 5270 Rosid View MSA
123750243 5271 Pentapetalae View MSA
122790111 5272 Eudicot View MSA
122049805 5273 Angiosperm View MSA
121349108 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.745        
cufflinks 15.066        
cufflinks 11.513       Low
cufflinks 18.867       High
cufflinks 15.475        
cufflinks 11.765       Low

0 Strain