Gene : AT4G17800 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31100:SF14 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 21-RELATED Genomic Order:  1710
Name:  ? AT4G17800 Secondary Identifier:  ? PAC:19647655
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G17800 0.5kb upstream 0.5kb upstream 1879 true Chr4: 9895290-9897168 Arabidopsis thaliana
AT4G17800 0.5kb upstream 0.5kb upstream 500 false Chr4: 9896669-9897168 Arabidopsis thaliana
AT4G17800 0.5kb downstream 0.5kb downstream 1879 true Chr4: 9894790-9896668 Arabidopsis thaliana
AT4G17800 0.5kb downstream 0.5kb downstream 500 false Chr4: 9894790-9895289 Arabidopsis thaliana
AT4G17800 1.0kb upstream 1.0kb upstream 2379 true Chr4: 9895290-9897668 Arabidopsis thaliana
AT4G17800 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9896669-9897668 Arabidopsis thaliana
AT4G17800 1.0kb downstream 1.0kb downstream 2379 true Chr4: 9894290-9896668 Arabidopsis thaliana
AT4G17800 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9894290-9895289 Arabidopsis thaliana
AT4G17800 2.0kb upstream 2.0kb upstream 3379 true Chr4: 9895290-9898668 Arabidopsis thaliana
AT4G17800 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9896669-9898668 Arabidopsis thaliana
AT4G17800 2.0kb downstream 2.0kb downstream 3379 true Chr4: 9893290-9896668 Arabidopsis thaliana
AT4G17800 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9893290-9895289 Arabidopsis thaliana
AT4G17800 5.0kb upstream 5.0kb upstream 6379 true Chr4: 9895290-9901668 Arabidopsis thaliana
AT4G17800 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9896669-9901668 Arabidopsis thaliana
AT4G17800 5.0kb downstream 5.0kb downstream 6379 true Chr4: 9890290-9896668 Arabidopsis thaliana
AT4G17800 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9890290-9895289 Arabidopsis thaliana
AT4G17800 10.0kb upstream 10.0kb upstream 11379 true Chr4: 9895290-9906668 Arabidopsis thaliana
AT4G17800 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9896669-9906668 Arabidopsis thaliana
AT4G17800 10.0kb downstream 10.0kb downstream 11379 true Chr4: 9885290-9896668 Arabidopsis thaliana
AT4G17800 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9885290-9895289 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375736 5261 Brassicaceae View MSA
123832921 5264 Brassicales-Malvales View MSA
124345818 5266 SBM View MSA
124237585 5268 Malvidae View MSA
124065416 5270 Rosid View MSA
123737026 5271 Pentapetalae View MSA
122789086 5272 Eudicot View MSA
122049731 5273 Angiosperm View MSA
121348557 5274 Embryophyte View MSA
123380913 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.03     Low  
cufflinks 29.911     High  
cufflinks 0.012     Low Low
cufflinks 46.096     High  
cufflinks 0.078     Low  
cufflinks 28.312        

0 Strain