Gene : SCL13 A. thaliana TAIR10
Primary Identifier:  ? AT4G17230 Defline:  (1 of 1) PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13
Genomic Order:  1645 Name:  ? AT4G17230
Secondary Identifier:  ? PAC:19648705
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G17230 0.5kb upstream 0.5kb upstream 3290 true Chr4: 9660985-9664274 Arabidopsis thaliana
AT4G17230 0.5kb upstream 0.5kb upstream 500 false Chr4: 9663775-9664274 Arabidopsis thaliana
AT4G17230 0.5kb downstream 0.5kb downstream 3290 true Chr4: 9660485-9663774 Arabidopsis thaliana
AT4G17230 0.5kb downstream 0.5kb downstream 500 false Chr4: 9660485-9660984 Arabidopsis thaliana
AT4G17230 1.0kb upstream 1.0kb upstream 3790 true Chr4: 9660985-9664774 Arabidopsis thaliana
AT4G17230 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9663775-9664774 Arabidopsis thaliana
AT4G17230 1.0kb downstream 1.0kb downstream 3790 true Chr4: 9659985-9663774 Arabidopsis thaliana
AT4G17230 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9659985-9660984 Arabidopsis thaliana
AT4G17230 2.0kb upstream 2.0kb upstream 4790 true Chr4: 9660985-9665774 Arabidopsis thaliana
AT4G17230 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9663775-9665774 Arabidopsis thaliana
AT4G17230 2.0kb downstream 2.0kb downstream 4790 true Chr4: 9658985-9663774 Arabidopsis thaliana
AT4G17230 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9658985-9660984 Arabidopsis thaliana
AT4G17230 5.0kb upstream 5.0kb upstream 7790 true Chr4: 9660985-9668774 Arabidopsis thaliana
AT4G17230 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9663775-9668774 Arabidopsis thaliana
AT4G17230 5.0kb downstream 5.0kb downstream 7790 true Chr4: 9655985-9663774 Arabidopsis thaliana
AT4G17230 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9655985-9660984 Arabidopsis thaliana
AT4G17230 10.0kb upstream 10.0kb upstream 12790 true Chr4: 9660985-9673774 Arabidopsis thaliana
AT4G17230 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9663775-9673774 Arabidopsis thaliana
AT4G17230 10.0kb downstream 10.0kb downstream 12790 true Chr4: 9650985-9663774 Arabidopsis thaliana
AT4G17230 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9650985-9660984 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377155 5261 Brassicaceae View MSA
123835909 5264 Brassicales-Malvales View MSA
124338129 5266 SBM View MSA
124240413 5268 Malvidae View MSA
124063713 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.378     High Low
cufflinks 79.398     High High
cufflinks 65.28     High  
cufflinks 59.369     High  
cufflinks 64.823     High  
cufflinks 67.409     High  

0 Strain