Gene : AT4G20000 A. thaliana TAIR10
Defline:  (1 of 32) PF05678 - VQ motif (VQ) Genomic Order:  1954
Name:  ? AT4G20000 Secondary Identifier:  ? PAC:19646622
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G20000 0.5kb upstream 0.5kb upstream 1333 true Chr4: 10837810-10839142 Arabidopsis thaliana
AT4G20000 0.5kb upstream 0.5kb upstream 500 false Chr4: 10837810-10838309 Arabidopsis thaliana
AT4G20000 0.5kb downstream 0.5kb downstream 1333 true Chr4: 10838310-10839642 Arabidopsis thaliana
AT4G20000 0.5kb downstream 0.5kb downstream 500 false Chr4: 10839143-10839642 Arabidopsis thaliana
AT4G20000 1.0kb upstream 1.0kb upstream 1833 true Chr4: 10837310-10839142 Arabidopsis thaliana
AT4G20000 1.0kb upstream 1.0kb upstream 1000 false Chr4: 10837310-10838309 Arabidopsis thaliana
AT4G20000 1.0kb downstream 1.0kb downstream 1833 true Chr4: 10838310-10840142 Arabidopsis thaliana
AT4G20000 1.0kb downstream 1.0kb downstream 1000 false Chr4: 10839143-10840142 Arabidopsis thaliana
AT4G20000 2.0kb upstream 2.0kb upstream 2833 true Chr4: 10836310-10839142 Arabidopsis thaliana
AT4G20000 2.0kb upstream 2.0kb upstream 2000 false Chr4: 10836310-10838309 Arabidopsis thaliana
AT4G20000 2.0kb downstream 2.0kb downstream 2833 true Chr4: 10838310-10841142 Arabidopsis thaliana
AT4G20000 2.0kb downstream 2.0kb downstream 2000 false Chr4: 10839143-10841142 Arabidopsis thaliana
AT4G20000 5.0kb upstream 5.0kb upstream 5833 true Chr4: 10833310-10839142 Arabidopsis thaliana
AT4G20000 5.0kb upstream 5.0kb upstream 5000 false Chr4: 10833310-10838309 Arabidopsis thaliana
AT4G20000 5.0kb downstream 5.0kb downstream 5833 true Chr4: 10838310-10844142 Arabidopsis thaliana
AT4G20000 5.0kb downstream 5.0kb downstream 5000 false Chr4: 10839143-10844142 Arabidopsis thaliana
AT4G20000 10.0kb upstream 10.0kb upstream 10833 true Chr4: 10828310-10839142 Arabidopsis thaliana
AT4G20000 10.0kb upstream 10.0kb upstream 10000 false Chr4: 10828310-10838309 Arabidopsis thaliana
AT4G20000 10.0kb downstream 10.0kb downstream 10833 true Chr4: 10838310-10849142 Arabidopsis thaliana
AT4G20000 10.0kb downstream 10.0kb downstream 10000 false Chr4: 10839143-10849142 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362472 5261 Brassicaceae View MSA
123798370 5264 Brassicales-Malvales View MSA
124296015 5266 SBM View MSA
124148293 5268 Malvidae View MSA
124071410 5270 Rosid View MSA
123750267 5271 Pentapetalae View MSA
122794981 5272 Eudicot View MSA
122048174 5273 Angiosperm View MSA
121350948 5274 Embryophyte View MSA
123381944 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.517        
cufflinks 1.344        
cufflinks 0.468       Low
cufflinks 6.687       High
cufflinks 0.688        
cufflinks 7.757       High

0 Strain