Gene : AT4G19900 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12042//PTHR12042:SF13 - LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  1941
Name:  ? AT4G19900 Secondary Identifier:  ? PAC:19648698
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G19900 0.5kb upstream 0.5kb upstream 2838 true Chr4: 10789096-10791933 Arabidopsis thaliana
AT4G19900 0.5kb upstream 0.5kb upstream 500 false Chr4: 10791434-10791933 Arabidopsis thaliana
AT4G19900 0.5kb downstream 0.5kb downstream 2838 true Chr4: 10788596-10791433 Arabidopsis thaliana
AT4G19900 0.5kb downstream 0.5kb downstream 500 false Chr4: 10788596-10789095 Arabidopsis thaliana
AT4G19900 1.0kb upstream 1.0kb upstream 3338 true Chr4: 10789096-10792433 Arabidopsis thaliana
AT4G19900 1.0kb upstream 1.0kb upstream 1000 false Chr4: 10791434-10792433 Arabidopsis thaliana
AT4G19900 1.0kb downstream 1.0kb downstream 3338 true Chr4: 10788096-10791433 Arabidopsis thaliana
AT4G19900 1.0kb downstream 1.0kb downstream 1000 false Chr4: 10788096-10789095 Arabidopsis thaliana
AT4G19900 2.0kb upstream 2.0kb upstream 4338 true Chr4: 10789096-10793433 Arabidopsis thaliana
AT4G19900 2.0kb upstream 2.0kb upstream 2000 false Chr4: 10791434-10793433 Arabidopsis thaliana
AT4G19900 2.0kb downstream 2.0kb downstream 4338 true Chr4: 10787096-10791433 Arabidopsis thaliana
AT4G19900 2.0kb downstream 2.0kb downstream 2000 false Chr4: 10787096-10789095 Arabidopsis thaliana
AT4G19900 5.0kb upstream 5.0kb upstream 7338 true Chr4: 10789096-10796433 Arabidopsis thaliana
AT4G19900 5.0kb upstream 5.0kb upstream 5000 false Chr4: 10791434-10796433 Arabidopsis thaliana
AT4G19900 5.0kb downstream 5.0kb downstream 7338 true Chr4: 10784096-10791433 Arabidopsis thaliana
AT4G19900 5.0kb downstream 5.0kb downstream 5000 false Chr4: 10784096-10789095 Arabidopsis thaliana
AT4G19900 10.0kb upstream 10.0kb upstream 12338 true Chr4: 10789096-10801433 Arabidopsis thaliana
AT4G19900 10.0kb upstream 10.0kb upstream 10000 false Chr4: 10791434-10801433 Arabidopsis thaliana
AT4G19900 10.0kb downstream 10.0kb downstream 12338 true Chr4: 10779096-10791433 Arabidopsis thaliana
AT4G19900 10.0kb downstream 10.0kb downstream 10000 false Chr4: 10779096-10789095 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378621 5261 Brassicaceae View MSA
123836905 5264 Brassicales-Malvales View MSA
124346890 5266 SBM View MSA
124245543 5268 Malvidae View MSA
124070707 5270 Rosid View MSA
123741933 5271 Pentapetalae View MSA
122794617 5272 Eudicot View MSA
122048319 5273 Angiosperm View MSA
121348346 5274 Embryophyte View MSA
123380826 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.762        
cufflinks 11.197        
cufflinks 7.455       Low
cufflinks 12.417       High
cufflinks 7.776        
cufflinks 10.565        

0 Strain