Gene : AT4G19440 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1894
Name:  ? AT4G19440 Secondary Identifier:  ? PAC:19648904
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G19440 0.5kb upstream 0.5kb upstream 4233 true Chr4: 10600788-10605020 Arabidopsis thaliana
AT4G19440 0.5kb upstream 0.5kb upstream 500 false Chr4: 10604521-10605020 Arabidopsis thaliana
AT4G19440 0.5kb downstream 0.5kb downstream 4233 true Chr4: 10600288-10604520 Arabidopsis thaliana
AT4G19440 0.5kb downstream 0.5kb downstream 500 false Chr4: 10600288-10600787 Arabidopsis thaliana
AT4G19440 1.0kb upstream 1.0kb upstream 4733 true Chr4: 10600788-10605520 Arabidopsis thaliana
AT4G19440 1.0kb upstream 1.0kb upstream 1000 false Chr4: 10604521-10605520 Arabidopsis thaliana
AT4G19440 1.0kb downstream 1.0kb downstream 4733 true Chr4: 10599788-10604520 Arabidopsis thaliana
AT4G19440 1.0kb downstream 1.0kb downstream 1000 false Chr4: 10599788-10600787 Arabidopsis thaliana
AT4G19440 2.0kb upstream 2.0kb upstream 5733 true Chr4: 10600788-10606520 Arabidopsis thaliana
AT4G19440 2.0kb upstream 2.0kb upstream 2000 false Chr4: 10604521-10606520 Arabidopsis thaliana
AT4G19440 2.0kb downstream 2.0kb downstream 5733 true Chr4: 10598788-10604520 Arabidopsis thaliana
AT4G19440 2.0kb downstream 2.0kb downstream 2000 false Chr4: 10598788-10600787 Arabidopsis thaliana
AT4G19440 5.0kb upstream 5.0kb upstream 8733 true Chr4: 10600788-10609520 Arabidopsis thaliana
AT4G19440 5.0kb upstream 5.0kb upstream 5000 false Chr4: 10604521-10609520 Arabidopsis thaliana
AT4G19440 5.0kb downstream 5.0kb downstream 8733 true Chr4: 10595788-10604520 Arabidopsis thaliana
AT4G19440 5.0kb downstream 5.0kb downstream 5000 false Chr4: 10595788-10600787 Arabidopsis thaliana
AT4G19440 10.0kb upstream 10.0kb upstream 13733 true Chr4: 10600788-10614520 Arabidopsis thaliana
AT4G19440 10.0kb upstream 10.0kb upstream 10000 false Chr4: 10604521-10614520 Arabidopsis thaliana
AT4G19440 10.0kb downstream 10.0kb downstream 13733 true Chr4: 10590788-10604520 Arabidopsis thaliana
AT4G19440 10.0kb downstream 10.0kb downstream 10000 false Chr4: 10590788-10600787 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377715 5261 Brassicaceae View MSA
123834353 5264 Brassicales-Malvales View MSA
124339820 5266 SBM View MSA
124251579 5268 Malvidae View MSA
124072588 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.49        
cufflinks 1.825        
cufflinks 1.053       Low
cufflinks 2.002        
cufflinks 0.967       Low
cufflinks 1.874        

0 Strain