Gene : AT4G21880 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2146
Name:  ? AT4G21880 Secondary Identifier:  ? PAC:19647741
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G21880 0.5kb upstream 0.5kb upstream 6166 true Chr4: 11604486-11610651 Arabidopsis thaliana
AT4G21880 0.5kb upstream 0.5kb upstream 500 false Chr4: 11604486-11604985 Arabidopsis thaliana
AT4G21880 0.5kb downstream 0.5kb downstream 6166 true Chr4: 11604986-11611151 Arabidopsis thaliana
AT4G21880 0.5kb downstream 0.5kb downstream 500 false Chr4: 11610652-11611151 Arabidopsis thaliana
AT4G21880 1.0kb upstream 1.0kb upstream 6666 true Chr4: 11603986-11610651 Arabidopsis thaliana
AT4G21880 1.0kb upstream 1.0kb upstream 1000 false Chr4: 11603986-11604985 Arabidopsis thaliana
AT4G21880 1.0kb downstream 1.0kb downstream 6666 true Chr4: 11604986-11611651 Arabidopsis thaliana
AT4G21880 1.0kb downstream 1.0kb downstream 1000 false Chr4: 11610652-11611651 Arabidopsis thaliana
AT4G21880 2.0kb upstream 2.0kb upstream 7666 true Chr4: 11602986-11610651 Arabidopsis thaliana
AT4G21880 2.0kb upstream 2.0kb upstream 2000 false Chr4: 11602986-11604985 Arabidopsis thaliana
AT4G21880 2.0kb downstream 2.0kb downstream 7666 true Chr4: 11604986-11612651 Arabidopsis thaliana
AT4G21880 2.0kb downstream 2.0kb downstream 2000 false Chr4: 11610652-11612651 Arabidopsis thaliana
AT4G21880 5.0kb upstream 5.0kb upstream 10666 true Chr4: 11599986-11610651 Arabidopsis thaliana
AT4G21880 5.0kb upstream 5.0kb upstream 5000 false Chr4: 11599986-11604985 Arabidopsis thaliana
AT4G21880 5.0kb downstream 5.0kb downstream 10666 true Chr4: 11604986-11615651 Arabidopsis thaliana
AT4G21880 5.0kb downstream 5.0kb downstream 5000 false Chr4: 11610652-11615651 Arabidopsis thaliana
AT4G21880 10.0kb upstream 10.0kb upstream 15666 true Chr4: 11594986-11610651 Arabidopsis thaliana
AT4G21880 10.0kb upstream 10.0kb upstream 10000 false Chr4: 11594986-11604985 Arabidopsis thaliana
AT4G21880 10.0kb downstream 10.0kb downstream 15666 true Chr4: 11604986-11620651 Arabidopsis thaliana
AT4G21880 10.0kb downstream 10.0kb downstream 10000 false Chr4: 11610652-11620651 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363254 5261 Brassicaceae View MSA
123836136 5264 Brassicales-Malvales View MSA
124322135 5266 SBM View MSA
124239590 5268 Malvidae View MSA
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.2       High
cufflinks 0.631        
cufflinks 0.543        
cufflinks 0.77        
cufflinks 0.424       Low
cufflinks 0.849        

0 Strain