Gene : SPHK1 A. thaliana TAIR10
Primary Identifier:  ? AT4G21540 Defline:  (1 of 2) 2.7.1.91 - Sphinganine kinase / Dihydrosphingosine kinase
Genomic Order:  2109 Name:  ? AT4G21540
Secondary Identifier:  ? PAC:19644366
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5129 Arabidopsis thaliana pathologic  
Athaliana PWY-6483 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G21540 0.5kb upstream 0.5kb upstream 3554 true Chr4: 11459053-11462606 Arabidopsis thaliana
AT4G21540 0.5kb upstream 0.5kb upstream 500 false Chr4: 11459053-11459552 Arabidopsis thaliana
AT4G21540 0.5kb downstream 0.5kb downstream 3554 true Chr4: 11459553-11463106 Arabidopsis thaliana
AT4G21540 0.5kb downstream 0.5kb downstream 500 false Chr4: 11462607-11463106 Arabidopsis thaliana
AT4G21540 1.0kb upstream 1.0kb upstream 4054 true Chr4: 11458553-11462606 Arabidopsis thaliana
AT4G21540 1.0kb upstream 1.0kb upstream 1000 false Chr4: 11458553-11459552 Arabidopsis thaliana
AT4G21540 1.0kb downstream 1.0kb downstream 4054 true Chr4: 11459553-11463606 Arabidopsis thaliana
AT4G21540 1.0kb downstream 1.0kb downstream 1000 false Chr4: 11462607-11463606 Arabidopsis thaliana
AT4G21540 2.0kb upstream 2.0kb upstream 5054 true Chr4: 11457553-11462606 Arabidopsis thaliana
AT4G21540 2.0kb upstream 2.0kb upstream 2000 false Chr4: 11457553-11459552 Arabidopsis thaliana
AT4G21540 2.0kb downstream 2.0kb downstream 5054 true Chr4: 11459553-11464606 Arabidopsis thaliana
AT4G21540 2.0kb downstream 2.0kb downstream 2000 false Chr4: 11462607-11464606 Arabidopsis thaliana
AT4G21540 5.0kb upstream 5.0kb upstream 8054 true Chr4: 11454553-11462606 Arabidopsis thaliana
AT4G21540 5.0kb upstream 5.0kb upstream 5000 false Chr4: 11454553-11459552 Arabidopsis thaliana
AT4G21540 5.0kb downstream 5.0kb downstream 8054 true Chr4: 11459553-11467606 Arabidopsis thaliana
AT4G21540 5.0kb downstream 5.0kb downstream 5000 false Chr4: 11462607-11467606 Arabidopsis thaliana
AT4G21540 10.0kb upstream 10.0kb upstream 13054 true Chr4: 11449553-11462606 Arabidopsis thaliana
AT4G21540 10.0kb upstream 10.0kb upstream 10000 false Chr4: 11449553-11459552 Arabidopsis thaliana
AT4G21540 10.0kb downstream 10.0kb downstream 13054 true Chr4: 11459553-11472606 Arabidopsis thaliana
AT4G21540 10.0kb downstream 10.0kb downstream 10000 false Chr4: 11462607-11472606 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369288 5261 Brassicaceae View MSA
123827390 5264 Brassicales-Malvales View MSA
124339583 5266 SBM View MSA
124247883 5268 Malvidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.487        
cufflinks 5.782        
cufflinks 3.431       Low
cufflinks 6.195       High
cufflinks 3.504       Low
cufflinks 4.873        

0 Strain