Gene : PUB8 A. thaliana TAIR10
Primary Identifier:  ? AT4G21350 Defline:  (1 of 1) PTHR23315//PTHR23315:SF112 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 8
Genomic Order:  2090 Name:  ? AT4G21350
Secondary Identifier:  ? PAC:19644126
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G21350 0.5kb upstream 0.5kb upstream 1625 true Chr4: 11356143-11357767 Arabidopsis thaliana
AT4G21350 0.5kb upstream 0.5kb upstream 500 false Chr4: 11357268-11357767 Arabidopsis thaliana
AT4G21350 0.5kb downstream 0.5kb downstream 1625 true Chr4: 11355643-11357267 Arabidopsis thaliana
AT4G21350 0.5kb downstream 0.5kb downstream 500 false Chr4: 11355643-11356142 Arabidopsis thaliana
AT4G21350 1.0kb upstream 1.0kb upstream 2125 true Chr4: 11356143-11358267 Arabidopsis thaliana
AT4G21350 1.0kb upstream 1.0kb upstream 1000 false Chr4: 11357268-11358267 Arabidopsis thaliana
AT4G21350 1.0kb downstream 1.0kb downstream 2125 true Chr4: 11355143-11357267 Arabidopsis thaliana
AT4G21350 1.0kb downstream 1.0kb downstream 1000 false Chr4: 11355143-11356142 Arabidopsis thaliana
AT4G21350 2.0kb upstream 2.0kb upstream 3125 true Chr4: 11356143-11359267 Arabidopsis thaliana
AT4G21350 2.0kb upstream 2.0kb upstream 2000 false Chr4: 11357268-11359267 Arabidopsis thaliana
AT4G21350 2.0kb downstream 2.0kb downstream 3125 true Chr4: 11354143-11357267 Arabidopsis thaliana
AT4G21350 2.0kb downstream 2.0kb downstream 2000 false Chr4: 11354143-11356142 Arabidopsis thaliana
AT4G21350 5.0kb upstream 5.0kb upstream 6125 true Chr4: 11356143-11362267 Arabidopsis thaliana
AT4G21350 5.0kb upstream 5.0kb upstream 5000 false Chr4: 11357268-11362267 Arabidopsis thaliana
AT4G21350 5.0kb downstream 5.0kb downstream 6125 true Chr4: 11351143-11357267 Arabidopsis thaliana
AT4G21350 5.0kb downstream 5.0kb downstream 5000 false Chr4: 11351143-11356142 Arabidopsis thaliana
AT4G21350 10.0kb upstream 10.0kb upstream 11125 true Chr4: 11356143-11367267 Arabidopsis thaliana
AT4G21350 10.0kb upstream 10.0kb upstream 10000 false Chr4: 11357268-11367267 Arabidopsis thaliana
AT4G21350 10.0kb downstream 10.0kb downstream 11125 true Chr4: 11346143-11357267 Arabidopsis thaliana
AT4G21350 10.0kb downstream 10.0kb downstream 10000 false Chr4: 11346143-11356142 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367766 5261 Brassicaceae View MSA
123830469 5264 Brassicales-Malvales View MSA
124339779 5266 SBM View MSA
124237455 5268 Malvidae View MSA
124067004 5270 Rosid View MSA
123739822 5271 Pentapetalae View MSA
122791659 5272 Eudicot View MSA
122041968 5273 Angiosperm View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.51        
cufflinks 12.086       Low
cufflinks 11.942       Low
cufflinks 14.505       High
cufflinks 13.406        
cufflinks 14.431        

0 Strain