Gene : BRCA1 A. thaliana TAIR10
Primary Identifier:  ? AT4G21070 Defline:  (1 of 1) PTHR13763//PTHR13763:SF1 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 // PROTEIN BREAST CANCER SUSCEPTIBILITY 1 HOMOLOG
Genomic Order:  2056 Name:  ? AT4G21070
Secondary Identifier:  ? PAC:19648778
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G21070 0.5kb upstream 0.5kb upstream 5147 true Chr4: 11247578-11252724 Arabidopsis thaliana
AT4G21070 0.5kb upstream 0.5kb upstream 500 false Chr4: 11247578-11248077 Arabidopsis thaliana
AT4G21070 0.5kb downstream 0.5kb downstream 5147 true Chr4: 11248078-11253224 Arabidopsis thaliana
AT4G21070 0.5kb downstream 0.5kb downstream 500 false Chr4: 11252725-11253224 Arabidopsis thaliana
AT4G21070 1.0kb upstream 1.0kb upstream 5647 true Chr4: 11247078-11252724 Arabidopsis thaliana
AT4G21070 1.0kb upstream 1.0kb upstream 1000 false Chr4: 11247078-11248077 Arabidopsis thaliana
AT4G21070 1.0kb downstream 1.0kb downstream 5647 true Chr4: 11248078-11253724 Arabidopsis thaliana
AT4G21070 1.0kb downstream 1.0kb downstream 1000 false Chr4: 11252725-11253724 Arabidopsis thaliana
AT4G21070 2.0kb upstream 2.0kb upstream 6647 true Chr4: 11246078-11252724 Arabidopsis thaliana
AT4G21070 2.0kb upstream 2.0kb upstream 2000 false Chr4: 11246078-11248077 Arabidopsis thaliana
AT4G21070 2.0kb downstream 2.0kb downstream 6647 true Chr4: 11248078-11254724 Arabidopsis thaliana
AT4G21070 2.0kb downstream 2.0kb downstream 2000 false Chr4: 11252725-11254724 Arabidopsis thaliana
AT4G21070 5.0kb upstream 5.0kb upstream 9647 true Chr4: 11243078-11252724 Arabidopsis thaliana
AT4G21070 5.0kb upstream 5.0kb upstream 5000 false Chr4: 11243078-11248077 Arabidopsis thaliana
AT4G21070 5.0kb downstream 5.0kb downstream 9647 true Chr4: 11248078-11257724 Arabidopsis thaliana
AT4G21070 5.0kb downstream 5.0kb downstream 5000 false Chr4: 11252725-11257724 Arabidopsis thaliana
AT4G21070 10.0kb upstream 10.0kb upstream 14647 true Chr4: 11238078-11252724 Arabidopsis thaliana
AT4G21070 10.0kb upstream 10.0kb upstream 10000 false Chr4: 11238078-11248077 Arabidopsis thaliana
AT4G21070 10.0kb downstream 10.0kb downstream 14647 true Chr4: 11248078-11262724 Arabidopsis thaliana
AT4G21070 10.0kb downstream 10.0kb downstream 10000 false Chr4: 11252725-11262724 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374369 5261 Brassicaceae View MSA
123828360 5264 Brassicales-Malvales View MSA
124321529 5266 SBM View MSA
124252293 5268 Malvidae View MSA
124069553 5270 Rosid View MSA
123745741 5271 Pentapetalae View MSA
122790490 5272 Eudicot View MSA
122049651 5273 Angiosperm View MSA
121346797 5274 Embryophyte View MSA
123380447 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.917        
cufflinks 2.382        
cufflinks 1.362        
cufflinks 2.363        
cufflinks 0.926       Low
cufflinks 3.076       High

0 Strain