Gene : TAF11 A. thaliana TAIR10
Primary Identifier:  ? AT4G20280 Defline:  (1 of 2) K03135 - transcription initiation factor TFIID subunit 11 (TAF11)
Genomic Order:  1983 Name:  ? AT4G20280
Secondary Identifier:  ? PAC:19646396
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G20280 0.5kb upstream 0.5kb upstream 1928 true Chr4: 10953047-10954974 Arabidopsis thaliana
AT4G20280 0.5kb upstream 0.5kb upstream 500 false Chr4: 10953047-10953546 Arabidopsis thaliana
AT4G20280 0.5kb downstream 0.5kb downstream 1928 true Chr4: 10953547-10955474 Arabidopsis thaliana
AT4G20280 0.5kb downstream 0.5kb downstream 500 false Chr4: 10954975-10955474 Arabidopsis thaliana
AT4G20280 1.0kb upstream 1.0kb upstream 2428 true Chr4: 10952547-10954974 Arabidopsis thaliana
AT4G20280 1.0kb upstream 1.0kb upstream 1000 false Chr4: 10952547-10953546 Arabidopsis thaliana
AT4G20280 1.0kb downstream 1.0kb downstream 2428 true Chr4: 10953547-10955974 Arabidopsis thaliana
AT4G20280 1.0kb downstream 1.0kb downstream 1000 false Chr4: 10954975-10955974 Arabidopsis thaliana
AT4G20280 2.0kb upstream 2.0kb upstream 3428 true Chr4: 10951547-10954974 Arabidopsis thaliana
AT4G20280 2.0kb upstream 2.0kb upstream 2000 false Chr4: 10951547-10953546 Arabidopsis thaliana
AT4G20280 2.0kb downstream 2.0kb downstream 3428 true Chr4: 10953547-10956974 Arabidopsis thaliana
AT4G20280 2.0kb downstream 2.0kb downstream 2000 false Chr4: 10954975-10956974 Arabidopsis thaliana
AT4G20280 5.0kb upstream 5.0kb upstream 6428 true Chr4: 10948547-10954974 Arabidopsis thaliana
AT4G20280 5.0kb upstream 5.0kb upstream 5000 false Chr4: 10948547-10953546 Arabidopsis thaliana
AT4G20280 5.0kb downstream 5.0kb downstream 6428 true Chr4: 10953547-10959974 Arabidopsis thaliana
AT4G20280 5.0kb downstream 5.0kb downstream 5000 false Chr4: 10954975-10959974 Arabidopsis thaliana
AT4G20280 10.0kb upstream 10.0kb upstream 11428 true Chr4: 10943547-10954974 Arabidopsis thaliana
AT4G20280 10.0kb upstream 10.0kb upstream 10000 false Chr4: 10943547-10953546 Arabidopsis thaliana
AT4G20280 10.0kb downstream 10.0kb downstream 11428 true Chr4: 10953547-10964974 Arabidopsis thaliana
AT4G20280 10.0kb downstream 10.0kb downstream 10000 false Chr4: 10954975-10964974 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367285 5261 Brassicaceae View MSA
123834056 5264 Brassicales-Malvales View MSA
124338047 5266 SBM View MSA
124241265 5268 Malvidae View MSA
124061468 5270 Rosid View MSA
123741122 5271 Pentapetalae View MSA
122793887 5272 Eudicot View MSA
122046222 5273 Angiosperm View MSA
121348235 5274 Embryophyte View MSA
123426477 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.521        
cufflinks 28.492       High
cufflinks 15.16        
cufflinks 26.897        
cufflinks 14.196        
cufflinks 24.545        

0 Strain