Gene : MBD1 A. thaliana TAIR10
Primary Identifier:  ? AT4G22745 Defline:  (1 of 1) PTHR12396//PTHR12396:SF10 - METHYL-CPG BINDING PROTEIN, MBD // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 1-RELATED
Genomic Order:  2247 Name:  ? AT4G22745
Secondary Identifier:  ? PAC:19646169
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G22745 0.5kb upstream 0.5kb upstream 1945 true Chr4: 11947313-11949257 Arabidopsis thaliana
AT4G22745 0.5kb upstream 0.5kb upstream 500 false Chr4: 11948758-11949257 Arabidopsis thaliana
AT4G22745 0.5kb downstream 0.5kb downstream 1945 true Chr4: 11946813-11948757 Arabidopsis thaliana
AT4G22745 0.5kb downstream 0.5kb downstream 500 false Chr4: 11946813-11947312 Arabidopsis thaliana
AT4G22745 1.0kb upstream 1.0kb upstream 2445 true Chr4: 11947313-11949757 Arabidopsis thaliana
AT4G22745 1.0kb upstream 1.0kb upstream 1000 false Chr4: 11948758-11949757 Arabidopsis thaliana
AT4G22745 1.0kb downstream 1.0kb downstream 2445 true Chr4: 11946313-11948757 Arabidopsis thaliana
AT4G22745 1.0kb downstream 1.0kb downstream 1000 false Chr4: 11946313-11947312 Arabidopsis thaliana
AT4G22745 2.0kb upstream 2.0kb upstream 3445 true Chr4: 11947313-11950757 Arabidopsis thaliana
AT4G22745 2.0kb upstream 2.0kb upstream 2000 false Chr4: 11948758-11950757 Arabidopsis thaliana
AT4G22745 2.0kb downstream 2.0kb downstream 3445 true Chr4: 11945313-11948757 Arabidopsis thaliana
AT4G22745 2.0kb downstream 2.0kb downstream 2000 false Chr4: 11945313-11947312 Arabidopsis thaliana
AT4G22745 5.0kb upstream 5.0kb upstream 6445 true Chr4: 11947313-11953757 Arabidopsis thaliana
AT4G22745 5.0kb upstream 5.0kb upstream 5000 false Chr4: 11948758-11953757 Arabidopsis thaliana
AT4G22745 5.0kb downstream 5.0kb downstream 6445 true Chr4: 11942313-11948757 Arabidopsis thaliana
AT4G22745 5.0kb downstream 5.0kb downstream 5000 false Chr4: 11942313-11947312 Arabidopsis thaliana
AT4G22745 10.0kb upstream 10.0kb upstream 11445 true Chr4: 11947313-11958757 Arabidopsis thaliana
AT4G22745 10.0kb upstream 10.0kb upstream 10000 false Chr4: 11948758-11958757 Arabidopsis thaliana
AT4G22745 10.0kb downstream 10.0kb downstream 11445 true Chr4: 11937313-11948757 Arabidopsis thaliana
AT4G22745 10.0kb downstream 10.0kb downstream 10000 false Chr4: 11937313-11947312 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122330563 5261 Brassicaceae Singleton cluster - no MSA
123771799 5264 Brassicales-Malvales Singleton cluster - no MSA
124270324 5266 SBM Singleton cluster - no MSA
124126407 5268 Malvidae Singleton cluster - no MSA
123855321 5270 Rosid Singleton cluster - no MSA
123441307 5271 Pentapetalae Singleton cluster - no MSA
122476892 5272 Eudicot Singleton cluster - no MSA
122043544 5273 Angiosperm View MSA
121310145 5274 Embryophyte View MSA
123347714 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.803       High
cufflinks 9.65        
cufflinks 8.369       Low
cufflinks 10.134        
cufflinks 9.467        
cufflinks 9.217        

0 Strain