Gene : AT4G22380 A. thaliana TAIR10
Defline:  (1 of 3) K12845 - U4/U6 small nuclear ribonucleoprotein SNU13 (SNU13, NHP2L) Genomic Order:  2207
Name:  ? AT4G22380 Secondary Identifier:  ? PAC:19648223
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G22380 0.5kb upstream 0.5kb upstream 1751 true Chr4: 11811750-11813500 Arabidopsis thaliana
AT4G22380 0.5kb upstream 0.5kb upstream 500 false Chr4: 11813001-11813500 Arabidopsis thaliana
AT4G22380 0.5kb downstream 0.5kb downstream 1751 true Chr4: 11811250-11813000 Arabidopsis thaliana
AT4G22380 0.5kb downstream 0.5kb downstream 500 false Chr4: 11811250-11811749 Arabidopsis thaliana
AT4G22380 1.0kb upstream 1.0kb upstream 2251 true Chr4: 11811750-11814000 Arabidopsis thaliana
AT4G22380 1.0kb upstream 1.0kb upstream 1000 false Chr4: 11813001-11814000 Arabidopsis thaliana
AT4G22380 1.0kb downstream 1.0kb downstream 2251 true Chr4: 11810750-11813000 Arabidopsis thaliana
AT4G22380 1.0kb downstream 1.0kb downstream 1000 false Chr4: 11810750-11811749 Arabidopsis thaliana
AT4G22380 2.0kb upstream 2.0kb upstream 3251 true Chr4: 11811750-11815000 Arabidopsis thaliana
AT4G22380 2.0kb upstream 2.0kb upstream 2000 false Chr4: 11813001-11815000 Arabidopsis thaliana
AT4G22380 2.0kb downstream 2.0kb downstream 3251 true Chr4: 11809750-11813000 Arabidopsis thaliana
AT4G22380 2.0kb downstream 2.0kb downstream 2000 false Chr4: 11809750-11811749 Arabidopsis thaliana
AT4G22380 5.0kb upstream 5.0kb upstream 6251 true Chr4: 11811750-11818000 Arabidopsis thaliana
AT4G22380 5.0kb upstream 5.0kb upstream 5000 false Chr4: 11813001-11818000 Arabidopsis thaliana
AT4G22380 5.0kb downstream 5.0kb downstream 6251 true Chr4: 11806750-11813000 Arabidopsis thaliana
AT4G22380 5.0kb downstream 5.0kb downstream 5000 false Chr4: 11806750-11811749 Arabidopsis thaliana
AT4G22380 10.0kb upstream 10.0kb upstream 11251 true Chr4: 11811750-11823000 Arabidopsis thaliana
AT4G22380 10.0kb upstream 10.0kb upstream 10000 false Chr4: 11813001-11823000 Arabidopsis thaliana
AT4G22380 10.0kb downstream 10.0kb downstream 11251 true Chr4: 11801750-11813000 Arabidopsis thaliana
AT4G22380 10.0kb downstream 10.0kb downstream 10000 false Chr4: 11801750-11811749 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381563 5261 Brassicaceae View MSA
123830295 5264 Brassicales-Malvales View MSA
124340254 5266 SBM View MSA
124248927 5268 Malvidae View MSA
124071487 5270 Rosid View MSA
123745089 5271 Pentapetalae View MSA
122792689 5272 Eudicot View MSA
122048288 5273 Angiosperm View MSA
121348705 5274 Embryophyte View MSA
123423886 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.717        
cufflinks 20.103        
cufflinks 12.698        
cufflinks 19.109        
cufflinks 10.764       Low
cufflinks 21.062        

0 Strain