Gene : AT4G23540 A. thaliana TAIR10
Defline:  (1 of 2) K14794 - ribosomal RNA-processing protein 12 (RRP12) Genomic Order:  2335
Name:  ? AT4G23540 Secondary Identifier:  ? PAC:19644732
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G23540 0.5kb upstream 0.5kb upstream 6508 true Chr4: 12280413-12286920 Arabidopsis thaliana
AT4G23540 0.5kb upstream 0.5kb upstream 500 false Chr4: 12286421-12286920 Arabidopsis thaliana
AT4G23540 0.5kb downstream 0.5kb downstream 6508 true Chr4: 12279913-12286420 Arabidopsis thaliana
AT4G23540 0.5kb downstream 0.5kb downstream 500 false Chr4: 12279913-12280412 Arabidopsis thaliana
AT4G23540 1.0kb upstream 1.0kb upstream 7008 true Chr4: 12280413-12287420 Arabidopsis thaliana
AT4G23540 1.0kb upstream 1.0kb upstream 1000 false Chr4: 12286421-12287420 Arabidopsis thaliana
AT4G23540 1.0kb downstream 1.0kb downstream 7008 true Chr4: 12279413-12286420 Arabidopsis thaliana
AT4G23540 1.0kb downstream 1.0kb downstream 1000 false Chr4: 12279413-12280412 Arabidopsis thaliana
AT4G23540 2.0kb upstream 2.0kb upstream 8008 true Chr4: 12280413-12288420 Arabidopsis thaliana
AT4G23540 2.0kb upstream 2.0kb upstream 2000 false Chr4: 12286421-12288420 Arabidopsis thaliana
AT4G23540 2.0kb downstream 2.0kb downstream 8008 true Chr4: 12278413-12286420 Arabidopsis thaliana
AT4G23540 2.0kb downstream 2.0kb downstream 2000 false Chr4: 12278413-12280412 Arabidopsis thaliana
AT4G23540 5.0kb upstream 5.0kb upstream 11008 true Chr4: 12280413-12291420 Arabidopsis thaliana
AT4G23540 5.0kb upstream 5.0kb upstream 5000 false Chr4: 12286421-12291420 Arabidopsis thaliana
AT4G23540 5.0kb downstream 5.0kb downstream 11008 true Chr4: 12275413-12286420 Arabidopsis thaliana
AT4G23540 5.0kb downstream 5.0kb downstream 5000 false Chr4: 12275413-12280412 Arabidopsis thaliana
AT4G23540 10.0kb upstream 10.0kb upstream 16008 true Chr4: 12280413-12296420 Arabidopsis thaliana
AT4G23540 10.0kb upstream 10.0kb upstream 10000 false Chr4: 12286421-12296420 Arabidopsis thaliana
AT4G23540 10.0kb downstream 10.0kb downstream 16008 true Chr4: 12270413-12286420 Arabidopsis thaliana
AT4G23540 10.0kb downstream 10.0kb downstream 10000 false Chr4: 12270413-12280412 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363754 5261 Brassicaceae View MSA
123830038 5264 Brassicales-Malvales View MSA
124342888 5266 SBM View MSA
124241561 5268 Malvidae View MSA
124064000 5270 Rosid View MSA
123738418 5271 Pentapetalae View MSA
122786075 5272 Eudicot View MSA
122044020 5273 Angiosperm View MSA
121310227 5274 Embryophyte View MSA
123347775 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.999        
cufflinks 5.116        
cufflinks 3.447       Low
cufflinks 5.334        
cufflinks 3.244       Low
cufflinks 5.699        

0 Strain