Gene : AT4G25600 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10869//PTHR10869:SF55 - PROLYL 4-HYDROXYLASE ALPHA SUBUNIT // OXOGLUTARATE/IRON-DEPENDENT OXYGENASE Genomic Order:  2556
Name:  ? AT4G25600 Secondary Identifier:  ? PAC:19648630
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G25600 0.5kb upstream 0.5kb upstream 2437 true Chr4: 13060159-13062595 Arabidopsis thaliana
AT4G25600 0.5kb upstream 0.5kb upstream 500 false Chr4: 13060159-13060658 Arabidopsis thaliana
AT4G25600 0.5kb downstream 0.5kb downstream 2437 true Chr4: 13060659-13063095 Arabidopsis thaliana
AT4G25600 0.5kb downstream 0.5kb downstream 500 false Chr4: 13062596-13063095 Arabidopsis thaliana
AT4G25600 1.0kb upstream 1.0kb upstream 2937 true Chr4: 13059659-13062595 Arabidopsis thaliana
AT4G25600 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13059659-13060658 Arabidopsis thaliana
AT4G25600 1.0kb downstream 1.0kb downstream 2937 true Chr4: 13060659-13063595 Arabidopsis thaliana
AT4G25600 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13062596-13063595 Arabidopsis thaliana
AT4G25600 2.0kb upstream 2.0kb upstream 3937 true Chr4: 13058659-13062595 Arabidopsis thaliana
AT4G25600 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13058659-13060658 Arabidopsis thaliana
AT4G25600 2.0kb downstream 2.0kb downstream 3937 true Chr4: 13060659-13064595 Arabidopsis thaliana
AT4G25600 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13062596-13064595 Arabidopsis thaliana
AT4G25600 5.0kb upstream 5.0kb upstream 6937 true Chr4: 13055659-13062595 Arabidopsis thaliana
AT4G25600 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13055659-13060658 Arabidopsis thaliana
AT4G25600 5.0kb downstream 5.0kb downstream 6937 true Chr4: 13060659-13067595 Arabidopsis thaliana
AT4G25600 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13062596-13067595 Arabidopsis thaliana
AT4G25600 10.0kb upstream 10.0kb upstream 11937 true Chr4: 13050659-13062595 Arabidopsis thaliana
AT4G25600 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13050659-13060658 Arabidopsis thaliana
AT4G25600 10.0kb downstream 10.0kb downstream 11937 true Chr4: 13060659-13072595 Arabidopsis thaliana
AT4G25600 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13062596-13072595 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791816 5273 Angiosperm View MSA
122367169 5261 Brassicaceae View MSA
123839423 5264 Brassicales-Malvales View MSA
124336549 5266 SBM View MSA
124240975 5268 Malvidae View MSA
124066883 5270 Rosid View MSA
123739634 5271 Pentapetalae View MSA
122794132 5272 Eudicot View MSA
121063105 5274 Embryophyte View MSA
123102888 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.58        
cufflinks 1.389       Low
cufflinks 3.147       High
cufflinks 1.836        
cufflinks 2.213        
cufflinks 1.445       Low

0 Strain