Gene : ACD1-LIKE A. thaliana TAIR10
Primary Identifier:  ? AT4G25650 Defline:  (1 of 1) PTHR21266:SF25 - PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT 52, CHLOROPLASTIC
Genomic Order:  2561 Name:  ? AT4G25650
Secondary Identifier:  ? PAC:19646489
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5098 Arabidopsis thaliana pathologic  
Athaliana PWY-6927 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G25650 0.5kb upstream 0.5kb upstream 2797 true Chr4: 13080901-13083697 Arabidopsis thaliana
AT4G25650 0.5kb upstream 0.5kb upstream 500 false Chr4: 13083198-13083697 Arabidopsis thaliana
AT4G25650 0.5kb downstream 0.5kb downstream 2797 true Chr4: 13080401-13083197 Arabidopsis thaliana
AT4G25650 0.5kb downstream 0.5kb downstream 500 false Chr4: 13080401-13080900 Arabidopsis thaliana
AT4G25650 1.0kb upstream 1.0kb upstream 3297 true Chr4: 13080901-13084197 Arabidopsis thaliana
AT4G25650 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13083198-13084197 Arabidopsis thaliana
AT4G25650 1.0kb downstream 1.0kb downstream 3297 true Chr4: 13079901-13083197 Arabidopsis thaliana
AT4G25650 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13079901-13080900 Arabidopsis thaliana
AT4G25650 2.0kb upstream 2.0kb upstream 4297 true Chr4: 13080901-13085197 Arabidopsis thaliana
AT4G25650 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13083198-13085197 Arabidopsis thaliana
AT4G25650 2.0kb downstream 2.0kb downstream 4297 true Chr4: 13078901-13083197 Arabidopsis thaliana
AT4G25650 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13078901-13080900 Arabidopsis thaliana
AT4G25650 5.0kb upstream 5.0kb upstream 7297 true Chr4: 13080901-13088197 Arabidopsis thaliana
AT4G25650 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13083198-13088197 Arabidopsis thaliana
AT4G25650 5.0kb downstream 5.0kb downstream 7297 true Chr4: 13075901-13083197 Arabidopsis thaliana
AT4G25650 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13075901-13080900 Arabidopsis thaliana
AT4G25650 10.0kb upstream 10.0kb upstream 12297 true Chr4: 13080901-13093197 Arabidopsis thaliana
AT4G25650 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13083198-13093197 Arabidopsis thaliana
AT4G25650 10.0kb downstream 10.0kb downstream 12297 true Chr4: 13070901-13083197 Arabidopsis thaliana
AT4G25650 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13070901-13080900 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370768 5261 Brassicaceae View MSA
123828575 5264 Brassicales-Malvales View MSA
124336609 5266 SBM View MSA
124240236 5268 Malvidae View MSA
124064980 5270 Rosid View MSA
123746425 5271 Pentapetalae View MSA
122797838 5272 Eudicot View MSA
122045189 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121347962 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.505        
cufflinks 3.497        
cufflinks 29.996     High  
cufflinks 3.866        
cufflinks 35.11     High High
cufflinks 3.148        

0 Strain