Gene : MSH3 A. thaliana TAIR10
Primary Identifier:  ? AT4G25540 Defline:  (1 of 1) K08736 - DNA mismatch repair protein MSH3 (MSH3)
Genomic Order:  2550 Name:  ? AT4G25540
Secondary Identifier:  ? PAC:19646843
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G25540 0.5kb upstream 0.5kb upstream 6157 true Chr4: 13042557-13048713 Arabidopsis thaliana
AT4G25540 0.5kb upstream 0.5kb upstream 500 false Chr4: 13048214-13048713 Arabidopsis thaliana
AT4G25540 0.5kb downstream 0.5kb downstream 6157 true Chr4: 13042057-13048213 Arabidopsis thaliana
AT4G25540 0.5kb downstream 0.5kb downstream 500 false Chr4: 13042057-13042556 Arabidopsis thaliana
AT4G25540 1.0kb upstream 1.0kb upstream 6657 true Chr4: 13042557-13049213 Arabidopsis thaliana
AT4G25540 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13048214-13049213 Arabidopsis thaliana
AT4G25540 1.0kb downstream 1.0kb downstream 6657 true Chr4: 13041557-13048213 Arabidopsis thaliana
AT4G25540 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13041557-13042556 Arabidopsis thaliana
AT4G25540 2.0kb upstream 2.0kb upstream 7657 true Chr4: 13042557-13050213 Arabidopsis thaliana
AT4G25540 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13048214-13050213 Arabidopsis thaliana
AT4G25540 2.0kb downstream 2.0kb downstream 7657 true Chr4: 13040557-13048213 Arabidopsis thaliana
AT4G25540 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13040557-13042556 Arabidopsis thaliana
AT4G25540 5.0kb upstream 5.0kb upstream 10657 true Chr4: 13042557-13053213 Arabidopsis thaliana
AT4G25540 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13048214-13053213 Arabidopsis thaliana
AT4G25540 5.0kb downstream 5.0kb downstream 10657 true Chr4: 13037557-13048213 Arabidopsis thaliana
AT4G25540 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13037557-13042556 Arabidopsis thaliana
AT4G25540 10.0kb upstream 10.0kb upstream 15657 true Chr4: 13042557-13058213 Arabidopsis thaliana
AT4G25540 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13048214-13058213 Arabidopsis thaliana
AT4G25540 10.0kb downstream 10.0kb downstream 15657 true Chr4: 13032557-13048213 Arabidopsis thaliana
AT4G25540 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13032557-13042556 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371810 5261 Brassicaceae View MSA
123829989 5264 Brassicales-Malvales View MSA
124340255 5266 SBM View MSA
124240646 5268 Malvidae View MSA
124067254 5270 Rosid View MSA
123737421 5271 Pentapetalae View MSA
122792724 5272 Eudicot View MSA
122046515 5273 Angiosperm View MSA
121349406 5274 Embryophyte View MSA
123426480 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.137     Low  
cufflinks 0.624        
cufflinks 0.128     Low Low
cufflinks 0.736       High
cufflinks 0.181     Low  
cufflinks 0.531        

0 Strain