Gene : AT4G25370 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11638//PTHR11638:SF105 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  2530
Name:  ? AT4G25370 Secondary Identifier:  ? PAC:19646340
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G25370 0.5kb upstream 0.5kb upstream 2663 true Chr4: 12972208-12974870 Arabidopsis thaliana
AT4G25370 0.5kb upstream 0.5kb upstream 500 false Chr4: 12972208-12972707 Arabidopsis thaliana
AT4G25370 0.5kb downstream 0.5kb downstream 2663 true Chr4: 12972708-12975370 Arabidopsis thaliana
AT4G25370 0.5kb downstream 0.5kb downstream 500 false Chr4: 12974871-12975370 Arabidopsis thaliana
AT4G25370 1.0kb upstream 1.0kb upstream 3163 true Chr4: 12971708-12974870 Arabidopsis thaliana
AT4G25370 1.0kb upstream 1.0kb upstream 1000 false Chr4: 12971708-12972707 Arabidopsis thaliana
AT4G25370 1.0kb downstream 1.0kb downstream 3163 true Chr4: 12972708-12975870 Arabidopsis thaliana
AT4G25370 1.0kb downstream 1.0kb downstream 1000 false Chr4: 12974871-12975870 Arabidopsis thaliana
AT4G25370 2.0kb upstream 2.0kb upstream 4163 true Chr4: 12970708-12974870 Arabidopsis thaliana
AT4G25370 2.0kb upstream 2.0kb upstream 2000 false Chr4: 12970708-12972707 Arabidopsis thaliana
AT4G25370 2.0kb downstream 2.0kb downstream 4163 true Chr4: 12972708-12976870 Arabidopsis thaliana
AT4G25370 2.0kb downstream 2.0kb downstream 2000 false Chr4: 12974871-12976870 Arabidopsis thaliana
AT4G25370 5.0kb upstream 5.0kb upstream 7163 true Chr4: 12967708-12974870 Arabidopsis thaliana
AT4G25370 5.0kb upstream 5.0kb upstream 5000 false Chr4: 12967708-12972707 Arabidopsis thaliana
AT4G25370 5.0kb downstream 5.0kb downstream 7163 true Chr4: 12972708-12979870 Arabidopsis thaliana
AT4G25370 5.0kb downstream 5.0kb downstream 5000 false Chr4: 12974871-12979870 Arabidopsis thaliana
AT4G25370 10.0kb upstream 10.0kb upstream 12163 true Chr4: 12962708-12974870 Arabidopsis thaliana
AT4G25370 10.0kb upstream 10.0kb upstream 10000 false Chr4: 12962708-12972707 Arabidopsis thaliana
AT4G25370 10.0kb downstream 10.0kb downstream 12163 true Chr4: 12972708-12984870 Arabidopsis thaliana
AT4G25370 10.0kb downstream 10.0kb downstream 10000 false Chr4: 12974871-12984870 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371950 5261 Brassicaceae View MSA
123833611 5264 Brassicales-Malvales View MSA
124346269 5266 SBM View MSA
124252123 5268 Malvidae View MSA
124064515 5270 Rosid View MSA
123741380 5271 Pentapetalae View MSA
122789129 5272 Eudicot View MSA
122047723 5273 Angiosperm View MSA
121348075 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 56.903     High  
cufflinks 18.34        
cufflinks 64.856     High High
cufflinks 17.884        
cufflinks 55.403     High  
cufflinks 16.344       Low

0 Strain