Gene : AT4G25280 A. thaliana TAIR10
Defline:  (1 of 3) K13800 - UMP-CMP kinase (CMPK1, UMPK) Genomic Order:  2520
Name:  ? AT4G25280 Secondary Identifier:  ? PAC:19648512
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY0-162 Arabidopsis thaliana pathologic  
Athaliana PWY-7176 Arabidopsis thaliana pathologic  
Athaliana PWY-7196 Arabidopsis thaliana pathologic  
Athaliana PWY-7197 Arabidopsis thaliana pathologic  
Athaliana PWY-7200 Arabidopsis thaliana pathologic  
Athaliana PWY-7205 Arabidopsis thaliana pathologic  
Athaliana PWY-7208 Arabidopsis thaliana pathologic  
Athaliana PWY-7211 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G25280 0.5kb upstream 0.5kb upstream 2289 true Chr4: 12938956-12941244 Arabidopsis thaliana
AT4G25280 0.5kb upstream 0.5kb upstream 500 false Chr4: 12940745-12941244 Arabidopsis thaliana
AT4G25280 0.5kb downstream 0.5kb downstream 2289 true Chr4: 12938456-12940744 Arabidopsis thaliana
AT4G25280 0.5kb downstream 0.5kb downstream 500 false Chr4: 12938456-12938955 Arabidopsis thaliana
AT4G25280 1.0kb upstream 1.0kb upstream 2789 true Chr4: 12938956-12941744 Arabidopsis thaliana
AT4G25280 1.0kb upstream 1.0kb upstream 1000 false Chr4: 12940745-12941744 Arabidopsis thaliana
AT4G25280 1.0kb downstream 1.0kb downstream 2789 true Chr4: 12937956-12940744 Arabidopsis thaliana
AT4G25280 1.0kb downstream 1.0kb downstream 1000 false Chr4: 12937956-12938955 Arabidopsis thaliana
AT4G25280 2.0kb upstream 2.0kb upstream 3789 true Chr4: 12938956-12942744 Arabidopsis thaliana
AT4G25280 2.0kb upstream 2.0kb upstream 2000 false Chr4: 12940745-12942744 Arabidopsis thaliana
AT4G25280 2.0kb downstream 2.0kb downstream 3789 true Chr4: 12936956-12940744 Arabidopsis thaliana
AT4G25280 2.0kb downstream 2.0kb downstream 2000 false Chr4: 12936956-12938955 Arabidopsis thaliana
AT4G25280 5.0kb upstream 5.0kb upstream 6789 true Chr4: 12938956-12945744 Arabidopsis thaliana
AT4G25280 5.0kb upstream 5.0kb upstream 5000 false Chr4: 12940745-12945744 Arabidopsis thaliana
AT4G25280 5.0kb downstream 5.0kb downstream 6789 true Chr4: 12933956-12940744 Arabidopsis thaliana
AT4G25280 5.0kb downstream 5.0kb downstream 5000 false Chr4: 12933956-12938955 Arabidopsis thaliana
AT4G25280 10.0kb upstream 10.0kb upstream 11789 true Chr4: 12938956-12950744 Arabidopsis thaliana
AT4G25280 10.0kb upstream 10.0kb upstream 10000 false Chr4: 12940745-12950744 Arabidopsis thaliana
AT4G25280 10.0kb downstream 10.0kb downstream 11789 true Chr4: 12928956-12940744 Arabidopsis thaliana
AT4G25280 10.0kb downstream 10.0kb downstream 10000 false Chr4: 12928956-12938955 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370094 5261 Brassicaceae View MSA
123835378 5264 Brassicales-Malvales View MSA
124344436 5266 SBM View MSA
124242269 5268 Malvidae View MSA
124061880 5270 Rosid View MSA
123746782 5271 Pentapetalae View MSA
122792294 5272 Eudicot View MSA
122047156 5273 Angiosperm View MSA
121350665 5274 Embryophyte View MSA
123427117 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.964        
cufflinks 7.982        
cufflinks 7.932        
cufflinks 8.13        
cufflinks 7.54        
cufflinks 6.489       Low

0 Strain