Gene : FSD1 A. thaliana TAIR10
Primary Identifier:  ? AT4G25100 Defline:  (1 of 2) PTHR11404//PTHR11404:SF24 - SUPEROXIDE DISMUTASE 2 // SUPEROXIDE DISMUTASE [FE] 2, CHLOROPLASTIC
Genomic Order:  2501 Name:  ? AT4G25100
Secondary Identifier:  ? PAC:19644132
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana DETOX1-PWY Arabidopsis thaliana pathologic  
Athaliana DETOX1-PWY-1 Arabidopsis thaliana pathologic  
Athaliana PWY-6854 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G25100 0.5kb upstream 0.5kb upstream 3212 true Chr4: 12884300-12887511 Arabidopsis thaliana
AT4G25100 0.5kb upstream 0.5kb upstream 500 false Chr4: 12887012-12887511 Arabidopsis thaliana
AT4G25100 0.5kb downstream 0.5kb downstream 3212 true Chr4: 12883800-12887011 Arabidopsis thaliana
AT4G25100 0.5kb downstream 0.5kb downstream 500 false Chr4: 12883800-12884299 Arabidopsis thaliana
AT4G25100 1.0kb upstream 1.0kb upstream 3712 true Chr4: 12884300-12888011 Arabidopsis thaliana
AT4G25100 1.0kb upstream 1.0kb upstream 1000 false Chr4: 12887012-12888011 Arabidopsis thaliana
AT4G25100 1.0kb downstream 1.0kb downstream 3712 true Chr4: 12883300-12887011 Arabidopsis thaliana
AT4G25100 1.0kb downstream 1.0kb downstream 1000 false Chr4: 12883300-12884299 Arabidopsis thaliana
AT4G25100 2.0kb upstream 2.0kb upstream 4712 true Chr4: 12884300-12889011 Arabidopsis thaliana
AT4G25100 2.0kb upstream 2.0kb upstream 2000 false Chr4: 12887012-12889011 Arabidopsis thaliana
AT4G25100 2.0kb downstream 2.0kb downstream 4712 true Chr4: 12882300-12887011 Arabidopsis thaliana
AT4G25100 2.0kb downstream 2.0kb downstream 2000 false Chr4: 12882300-12884299 Arabidopsis thaliana
AT4G25100 5.0kb upstream 5.0kb upstream 7712 true Chr4: 12884300-12892011 Arabidopsis thaliana
AT4G25100 5.0kb upstream 5.0kb upstream 5000 false Chr4: 12887012-12892011 Arabidopsis thaliana
AT4G25100 5.0kb downstream 5.0kb downstream 7712 true Chr4: 12879300-12887011 Arabidopsis thaliana
AT4G25100 5.0kb downstream 5.0kb downstream 5000 false Chr4: 12879300-12884299 Arabidopsis thaliana
AT4G25100 10.0kb upstream 10.0kb upstream 12712 true Chr4: 12884300-12897011 Arabidopsis thaliana
AT4G25100 10.0kb upstream 10.0kb upstream 10000 false Chr4: 12887012-12897011 Arabidopsis thaliana
AT4G25100 10.0kb downstream 10.0kb downstream 12712 true Chr4: 12874300-12887011 Arabidopsis thaliana
AT4G25100 10.0kb downstream 10.0kb downstream 10000 false Chr4: 12874300-12884299 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370198 5261 Brassicaceae View MSA
123799915 5264 Brassicales-Malvales View MSA
124297385 5266 SBM View MSA
124149294 5268 Malvidae View MSA
124072391 5270 Rosid View MSA
123741409 5271 Pentapetalae View MSA
122787652 5272 Eudicot View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.93       Low
cufflinks 59.248     High High
cufflinks 49.195     High  
cufflinks 23.882        
cufflinks 46.913     High  
cufflinks 29.438     High  

0 Strain