Gene : AT4G28070 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  2825
Name:  ? AT4G28070 Secondary Identifier:  ? PAC:19647467
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ANAEROFRUCAT-PWY Arabidopsis thaliana pathologic  
Athaliana ANAGLYCOLYSIS-PWY Arabidopsis thaliana pathologic  
Athaliana GLUCOSE1PMETAB-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-621 Arabidopsis thaliana pathologic  
Athaliana PWY-7238 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G28070 0.5kb upstream 0.5kb upstream 3236 true Chr4: 13945392-13948627 Arabidopsis thaliana
AT4G28070 0.5kb upstream 0.5kb upstream 500 false Chr4: 13945392-13945891 Arabidopsis thaliana
AT4G28070 0.5kb downstream 0.5kb downstream 3236 true Chr4: 13945892-13949127 Arabidopsis thaliana
AT4G28070 0.5kb downstream 0.5kb downstream 500 false Chr4: 13948628-13949127 Arabidopsis thaliana
AT4G28070 1.0kb upstream 1.0kb upstream 3736 true Chr4: 13944892-13948627 Arabidopsis thaliana
AT4G28070 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13944892-13945891 Arabidopsis thaliana
AT4G28070 1.0kb downstream 1.0kb downstream 3736 true Chr4: 13945892-13949627 Arabidopsis thaliana
AT4G28070 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13948628-13949627 Arabidopsis thaliana
AT4G28070 2.0kb upstream 2.0kb upstream 4736 true Chr4: 13943892-13948627 Arabidopsis thaliana
AT4G28070 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13943892-13945891 Arabidopsis thaliana
AT4G28070 2.0kb downstream 2.0kb downstream 4736 true Chr4: 13945892-13950627 Arabidopsis thaliana
AT4G28070 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13948628-13950627 Arabidopsis thaliana
AT4G28070 5.0kb upstream 5.0kb upstream 7736 true Chr4: 13940892-13948627 Arabidopsis thaliana
AT4G28070 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13940892-13945891 Arabidopsis thaliana
AT4G28070 5.0kb downstream 5.0kb downstream 7736 true Chr4: 13945892-13953627 Arabidopsis thaliana
AT4G28070 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13948628-13953627 Arabidopsis thaliana
AT4G28070 10.0kb upstream 10.0kb upstream 12736 true Chr4: 13935892-13948627 Arabidopsis thaliana
AT4G28070 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13935892-13945891 Arabidopsis thaliana
AT4G28070 10.0kb downstream 10.0kb downstream 12736 true Chr4: 13945892-13958627 Arabidopsis thaliana
AT4G28070 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13948628-13958627 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374255 5261 Brassicaceae View MSA
123800714 5264 Brassicales-Malvales View MSA
124346939 5266 SBM View MSA
124240736 5268 Malvidae View MSA
124061792 5270 Rosid View MSA
123752091 5271 Pentapetalae View MSA
122793026 5272 Eudicot View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.026        
cufflinks 2.468        
cufflinks 0.92       Low
cufflinks 2.74       High
cufflinks 1.326        
cufflinks 2.246        

0 Strain