Gene : CIP7 A. thaliana TAIR10
Primary Identifier:  ? AT4G27430 Defline:  (1 of 1) PTHR31008//PTHR31008:SF4 - COP1-INTERACTING PROTEIN-RELATED // COP1-INTERACTING PROTEIN 7 (CIP7)
Genomic Order:  2752 Name:  ? AT4G27430
Secondary Identifier:  ? PAC:19644063
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G27430 0.5kb upstream 0.5kb upstream 5146 true Chr4: 13718179-13723324 Arabidopsis thaliana
AT4G27430 0.5kb upstream 0.5kb upstream 500 false Chr4: 13718179-13718678 Arabidopsis thaliana
AT4G27430 0.5kb downstream 0.5kb downstream 5146 true Chr4: 13718679-13723824 Arabidopsis thaliana
AT4G27430 0.5kb downstream 0.5kb downstream 500 false Chr4: 13723325-13723824 Arabidopsis thaliana
AT4G27430 1.0kb upstream 1.0kb upstream 5646 true Chr4: 13717679-13723324 Arabidopsis thaliana
AT4G27430 1.0kb upstream 1.0kb upstream 1000 false Chr4: 13717679-13718678 Arabidopsis thaliana
AT4G27430 1.0kb downstream 1.0kb downstream 5646 true Chr4: 13718679-13724324 Arabidopsis thaliana
AT4G27430 1.0kb downstream 1.0kb downstream 1000 false Chr4: 13723325-13724324 Arabidopsis thaliana
AT4G27430 2.0kb upstream 2.0kb upstream 6646 true Chr4: 13716679-13723324 Arabidopsis thaliana
AT4G27430 2.0kb upstream 2.0kb upstream 2000 false Chr4: 13716679-13718678 Arabidopsis thaliana
AT4G27430 2.0kb downstream 2.0kb downstream 6646 true Chr4: 13718679-13725324 Arabidopsis thaliana
AT4G27430 2.0kb downstream 2.0kb downstream 2000 false Chr4: 13723325-13725324 Arabidopsis thaliana
AT4G27430 5.0kb upstream 5.0kb upstream 9646 true Chr4: 13713679-13723324 Arabidopsis thaliana
AT4G27430 5.0kb upstream 5.0kb upstream 5000 false Chr4: 13713679-13718678 Arabidopsis thaliana
AT4G27430 5.0kb downstream 5.0kb downstream 9646 true Chr4: 13718679-13728324 Arabidopsis thaliana
AT4G27430 5.0kb downstream 5.0kb downstream 5000 false Chr4: 13723325-13728324 Arabidopsis thaliana
AT4G27430 10.0kb upstream 10.0kb upstream 14646 true Chr4: 13708679-13723324 Arabidopsis thaliana
AT4G27430 10.0kb upstream 10.0kb upstream 10000 false Chr4: 13708679-13718678 Arabidopsis thaliana
AT4G27430 10.0kb downstream 10.0kb downstream 14646 true Chr4: 13718679-13733324 Arabidopsis thaliana
AT4G27430 10.0kb downstream 10.0kb downstream 10000 false Chr4: 13723325-13733324 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361414 5261 Brassicaceae View MSA
123829868 5264 Brassicales-Malvales View MSA
124342419 5266 SBM View MSA
124239457 5268 Malvidae View MSA
124068447 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.221        
cufflinks 13.381        
cufflinks 10.184        
cufflinks 13.003        
cufflinks 9.53       Low
cufflinks 16.107       High

0 Strain