Gene : CKX4 A. thaliana TAIR10
Primary Identifier:  ? AT4G29740 Defline:  (1 of 3) PTHR13878//PTHR13878:SF14 - GULONOLACTONE OXIDASE // SUBFAMILY NOT NAMED
Genomic Order:  3011 Name:  ? AT4G29740
Secondary Identifier:  ? PAC:19646864
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G29740 0.5kb upstream 0.5kb upstream 3568 true Chr4: 14565765-14569332 Arabidopsis thaliana
AT4G29740 0.5kb upstream 0.5kb upstream 500 false Chr4: 14565765-14566264 Arabidopsis thaliana
AT4G29740 0.5kb downstream 0.5kb downstream 3568 true Chr4: 14566265-14569832 Arabidopsis thaliana
AT4G29740 0.5kb downstream 0.5kb downstream 500 false Chr4: 14569333-14569832 Arabidopsis thaliana
AT4G29740 1.0kb upstream 1.0kb upstream 4068 true Chr4: 14565265-14569332 Arabidopsis thaliana
AT4G29740 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14565265-14566264 Arabidopsis thaliana
AT4G29740 1.0kb downstream 1.0kb downstream 4068 true Chr4: 14566265-14570332 Arabidopsis thaliana
AT4G29740 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14569333-14570332 Arabidopsis thaliana
AT4G29740 2.0kb upstream 2.0kb upstream 5068 true Chr4: 14564265-14569332 Arabidopsis thaliana
AT4G29740 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14564265-14566264 Arabidopsis thaliana
AT4G29740 2.0kb downstream 2.0kb downstream 5068 true Chr4: 14566265-14571332 Arabidopsis thaliana
AT4G29740 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14569333-14571332 Arabidopsis thaliana
AT4G29740 5.0kb upstream 5.0kb upstream 8068 true Chr4: 14561265-14569332 Arabidopsis thaliana
AT4G29740 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14561265-14566264 Arabidopsis thaliana
AT4G29740 5.0kb downstream 5.0kb downstream 8068 true Chr4: 14566265-14574332 Arabidopsis thaliana
AT4G29740 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14569333-14574332 Arabidopsis thaliana
AT4G29740 10.0kb upstream 10.0kb upstream 13068 true Chr4: 14556265-14569332 Arabidopsis thaliana
AT4G29740 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14556265-14566264 Arabidopsis thaliana
AT4G29740 10.0kb downstream 10.0kb downstream 13068 true Chr4: 14566265-14579332 Arabidopsis thaliana
AT4G29740 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14569333-14579332 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362867 5261 Brassicaceae View MSA
123837949 5264 Brassicales-Malvales View MSA
124344790 5266 SBM View MSA
124253267 5268 Malvidae View MSA
124067261 5270 Rosid View MSA
123742182 5271 Pentapetalae View MSA
122770229 5272 Eudicot View MSA
122051294 5273 Angiosperm View MSA
121312401 5274 Embryophyte View MSA
123349577 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.413       High
cufflinks 0.317     Low Low
cufflinks 0.786        
cufflinks 0.48        
cufflinks 0.583        
cufflinks 0.532        

0 Strain