Gene : AT4G29580 A. thaliana TAIR10
Defline:  (1 of 9) 3.5.4.5 - Cytidine deaminase / Cytosine nucleoside deaminase Genomic Order:  2992
Name:  ? AT4G29580 Secondary Identifier:  ? PAC:19644246
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6556 Arabidopsis thaliana pathologic  
Athaliana PWY-7193 Arabidopsis thaliana pathologic  
Athaliana PWY-7196 Arabidopsis thaliana pathologic  
Athaliana PWY-7199 Arabidopsis thaliana pathologic  
Athaliana PWY-7200 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G29580 0.5kb upstream 0.5kb upstream 2540 true Chr4: 14509647-14512186 Arabidopsis thaliana
AT4G29580 0.5kb upstream 0.5kb upstream 500 false Chr4: 14509647-14510146 Arabidopsis thaliana
AT4G29580 0.5kb downstream 0.5kb downstream 2540 true Chr4: 14510147-14512686 Arabidopsis thaliana
AT4G29580 0.5kb downstream 0.5kb downstream 500 false Chr4: 14512187-14512686 Arabidopsis thaliana
AT4G29580 1.0kb upstream 1.0kb upstream 3040 true Chr4: 14509147-14512186 Arabidopsis thaliana
AT4G29580 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14509147-14510146 Arabidopsis thaliana
AT4G29580 1.0kb downstream 1.0kb downstream 3040 true Chr4: 14510147-14513186 Arabidopsis thaliana
AT4G29580 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14512187-14513186 Arabidopsis thaliana
AT4G29580 2.0kb upstream 2.0kb upstream 4040 true Chr4: 14508147-14512186 Arabidopsis thaliana
AT4G29580 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14508147-14510146 Arabidopsis thaliana
AT4G29580 2.0kb downstream 2.0kb downstream 4040 true Chr4: 14510147-14514186 Arabidopsis thaliana
AT4G29580 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14512187-14514186 Arabidopsis thaliana
AT4G29580 5.0kb upstream 5.0kb upstream 7040 true Chr4: 14505147-14512186 Arabidopsis thaliana
AT4G29580 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14505147-14510146 Arabidopsis thaliana
AT4G29580 5.0kb downstream 5.0kb downstream 7040 true Chr4: 14510147-14517186 Arabidopsis thaliana
AT4G29580 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14512187-14517186 Arabidopsis thaliana
AT4G29580 10.0kb upstream 10.0kb upstream 12040 true Chr4: 14500147-14512186 Arabidopsis thaliana
AT4G29580 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14500147-14510146 Arabidopsis thaliana
AT4G29580 10.0kb downstream 10.0kb downstream 12040 true Chr4: 14510147-14522186 Arabidopsis thaliana
AT4G29580 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14512187-14522186 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121494656 5273 Angiosperm Singleton cluster - no MSA
122330395 5261 Brassicaceae Singleton cluster - no MSA
123771643 5264 Brassicales-Malvales Singleton cluster - no MSA
124270171 5266 SBM Singleton cluster - no MSA
124126264 5268 Malvidae Singleton cluster - no MSA
123855188 5270 Rosid Singleton cluster - no MSA
123441179 5271 Pentapetalae Singleton cluster - no MSA
122476764 5272 Eudicot Singleton cluster - no MSA
120768025 5274 Embryophyte Singleton cluster - no MSA
122810416 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain