Gene : AT4G29610 A. thaliana TAIR10
Defline:  (1 of 9) 3.5.4.5 - Cytidine deaminase / Cytosine nucleoside deaminase Genomic Order:  2995
Name:  ? AT4G29610 Secondary Identifier:  ? PAC:19646183
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6556 Arabidopsis thaliana pathologic  
Athaliana PWY-7193 Arabidopsis thaliana pathologic  
Athaliana PWY-7196 Arabidopsis thaliana pathologic  
Athaliana PWY-7199 Arabidopsis thaliana pathologic  
Athaliana PWY-7200 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G29610 0.5kb upstream 0.5kb upstream 1382 true Chr4: 14516948-14518329 Arabidopsis thaliana
AT4G29610 0.5kb upstream 0.5kb upstream 500 false Chr4: 14516948-14517447 Arabidopsis thaliana
AT4G29610 0.5kb downstream 0.5kb downstream 1382 true Chr4: 14517448-14518829 Arabidopsis thaliana
AT4G29610 0.5kb downstream 0.5kb downstream 500 false Chr4: 14518330-14518829 Arabidopsis thaliana
AT4G29610 1.0kb upstream 1.0kb upstream 1882 true Chr4: 14516448-14518329 Arabidopsis thaliana
AT4G29610 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14516448-14517447 Arabidopsis thaliana
AT4G29610 1.0kb downstream 1.0kb downstream 1882 true Chr4: 14517448-14519329 Arabidopsis thaliana
AT4G29610 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14518330-14519329 Arabidopsis thaliana
AT4G29610 2.0kb upstream 2.0kb upstream 2882 true Chr4: 14515448-14518329 Arabidopsis thaliana
AT4G29610 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14515448-14517447 Arabidopsis thaliana
AT4G29610 2.0kb downstream 2.0kb downstream 2882 true Chr4: 14517448-14520329 Arabidopsis thaliana
AT4G29610 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14518330-14520329 Arabidopsis thaliana
AT4G29610 5.0kb upstream 5.0kb upstream 5882 true Chr4: 14512448-14518329 Arabidopsis thaliana
AT4G29610 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14512448-14517447 Arabidopsis thaliana
AT4G29610 5.0kb downstream 5.0kb downstream 5882 true Chr4: 14517448-14523329 Arabidopsis thaliana
AT4G29610 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14518330-14523329 Arabidopsis thaliana
AT4G29610 10.0kb upstream 10.0kb upstream 10882 true Chr4: 14507448-14518329 Arabidopsis thaliana
AT4G29610 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14507448-14517447 Arabidopsis thaliana
AT4G29610 10.0kb downstream 10.0kb downstream 10882 true Chr4: 14517448-14528329 Arabidopsis thaliana
AT4G29610 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14518330-14528329 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381221 5261 Brassicaceae View MSA
123839427 5264 Brassicales-Malvales View MSA
124337492 5266 SBM View MSA
124238889 5268 Malvidae View MSA
124068161 5270 Rosid View MSA
123744425 5271 Pentapetalae View MSA
122793352 5272 Eudicot View MSA
122048037 5273 Angiosperm View MSA
121343942 5274 Embryophyte View MSA
123424852 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.719        
cufflinks 0.72       Low
cufflinks 6.915       High
cufflinks 1.157        
cufflinks 4.177        
cufflinks 1.014        

0 Strain