Gene : AT4G29000 A. thaliana TAIR10
Defline:  (1 of 4) PTHR12446//PTHR12446:SF14 - TESMIN/TSO1-RELATED // PROTEIN LIN-54 HOMOLOG Genomic Order:  2928
Name:  ? AT4G29000 Secondary Identifier:  ? PAC:19646537
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G29000 0.5kb upstream 0.5kb upstream 4054 true Chr4: 14293013-14297066 Arabidopsis thaliana
AT4G29000 0.5kb upstream 0.5kb upstream 500 false Chr4: 14293013-14293512 Arabidopsis thaliana
AT4G29000 0.5kb downstream 0.5kb downstream 4054 true Chr4: 14293513-14297566 Arabidopsis thaliana
AT4G29000 0.5kb downstream 0.5kb downstream 500 false Chr4: 14297067-14297566 Arabidopsis thaliana
AT4G29000 1.0kb upstream 1.0kb upstream 4554 true Chr4: 14292513-14297066 Arabidopsis thaliana
AT4G29000 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14292513-14293512 Arabidopsis thaliana
AT4G29000 1.0kb downstream 1.0kb downstream 4554 true Chr4: 14293513-14298066 Arabidopsis thaliana
AT4G29000 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14297067-14298066 Arabidopsis thaliana
AT4G29000 2.0kb upstream 2.0kb upstream 5554 true Chr4: 14291513-14297066 Arabidopsis thaliana
AT4G29000 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14291513-14293512 Arabidopsis thaliana
AT4G29000 2.0kb downstream 2.0kb downstream 5554 true Chr4: 14293513-14299066 Arabidopsis thaliana
AT4G29000 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14297067-14299066 Arabidopsis thaliana
AT4G29000 5.0kb upstream 5.0kb upstream 8554 true Chr4: 14288513-14297066 Arabidopsis thaliana
AT4G29000 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14288513-14293512 Arabidopsis thaliana
AT4G29000 5.0kb downstream 5.0kb downstream 8554 true Chr4: 14293513-14302066 Arabidopsis thaliana
AT4G29000 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14297067-14302066 Arabidopsis thaliana
AT4G29000 10.0kb upstream 10.0kb upstream 13554 true Chr4: 14283513-14297066 Arabidopsis thaliana
AT4G29000 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14283513-14293512 Arabidopsis thaliana
AT4G29000 10.0kb downstream 10.0kb downstream 13554 true Chr4: 14293513-14307066 Arabidopsis thaliana
AT4G29000 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14297067-14307066 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368040 5261 Brassicaceae View MSA
123837236 5264 Brassicales-Malvales View MSA
124337000 5266 SBM View MSA
124241299 5268 Malvidae View MSA
124069206 5270 Rosid View MSA
123746618 5271 Pentapetalae View MSA
122795390 5272 Eudicot View MSA
122042831 5273 Angiosperm View MSA
121349847 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.641        
cufflinks 4.916        
cufflinks 3.438       Low
cufflinks 5.631       High
cufflinks 4.038        
cufflinks 4.683        

0 Strain