Gene : ckl3 A. thaliana TAIR10
Primary Identifier:  ? AT4G28880 Defline:  (1 of 2) PTHR11909:SF97 - CASEIN KINASE 1-LIKE PROTEIN 4
Genomic Order:  2919 Name:  ? AT4G28880
Secondary Identifier:  ? PAC:19648613
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G28880 0.5kb upstream 0.5kb upstream 3719 true Chr4: 14250714-14254432 Arabidopsis thaliana
AT4G28880 0.5kb upstream 0.5kb upstream 500 false Chr4: 14250714-14251213 Arabidopsis thaliana
AT4G28880 0.5kb downstream 0.5kb downstream 3719 true Chr4: 14251214-14254932 Arabidopsis thaliana
AT4G28880 0.5kb downstream 0.5kb downstream 500 false Chr4: 14254433-14254932 Arabidopsis thaliana
AT4G28880 1.0kb upstream 1.0kb upstream 4219 true Chr4: 14250214-14254432 Arabidopsis thaliana
AT4G28880 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14250214-14251213 Arabidopsis thaliana
AT4G28880 1.0kb downstream 1.0kb downstream 4219 true Chr4: 14251214-14255432 Arabidopsis thaliana
AT4G28880 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14254433-14255432 Arabidopsis thaliana
AT4G28880 2.0kb upstream 2.0kb upstream 5219 true Chr4: 14249214-14254432 Arabidopsis thaliana
AT4G28880 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14249214-14251213 Arabidopsis thaliana
AT4G28880 2.0kb downstream 2.0kb downstream 5219 true Chr4: 14251214-14256432 Arabidopsis thaliana
AT4G28880 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14254433-14256432 Arabidopsis thaliana
AT4G28880 5.0kb upstream 5.0kb upstream 8219 true Chr4: 14246214-14254432 Arabidopsis thaliana
AT4G28880 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14246214-14251213 Arabidopsis thaliana
AT4G28880 5.0kb downstream 5.0kb downstream 8219 true Chr4: 14251214-14259432 Arabidopsis thaliana
AT4G28880 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14254433-14259432 Arabidopsis thaliana
AT4G28880 10.0kb upstream 10.0kb upstream 13219 true Chr4: 14241214-14254432 Arabidopsis thaliana
AT4G28880 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14241214-14251213 Arabidopsis thaliana
AT4G28880 10.0kb downstream 10.0kb downstream 13219 true Chr4: 14251214-14264432 Arabidopsis thaliana
AT4G28880 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14254433-14264432 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363981 5261 Brassicaceae View MSA
123827364 5264 Brassicales-Malvales View MSA
124345182 5266 SBM View MSA
124241613 5268 Malvidae View MSA
124072263 5270 Rosid View MSA
123747216 5271 Pentapetalae View MSA
122797484 5272 Eudicot View MSA
122041934 5273 Angiosperm View MSA
121349528 5274 Embryophyte View MSA
123427595 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.736        
cufflinks 31.094     High  
cufflinks 21.766        
cufflinks 36.085     High High
cufflinks 22.292        
cufflinks 25.301        

0 Strain