Gene : YUC8 A. thaliana TAIR10
Primary Identifier:  ? AT4G28720 Defline:  (1 of 3) PTHR23023:SF83 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA5-RELATED
Genomic Order:  2901 Name:  ? AT4G28720
Secondary Identifier:  ? PAC:19645923
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWYDQC-4 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G28720 0.5kb upstream 0.5kb upstream 2174 true Chr4: 14192083-14194256 Arabidopsis thaliana
AT4G28720 0.5kb upstream 0.5kb upstream 500 false Chr4: 14192083-14192582 Arabidopsis thaliana
AT4G28720 0.5kb downstream 0.5kb downstream 2174 true Chr4: 14192583-14194756 Arabidopsis thaliana
AT4G28720 0.5kb downstream 0.5kb downstream 500 false Chr4: 14194257-14194756 Arabidopsis thaliana
AT4G28720 1.0kb upstream 1.0kb upstream 2674 true Chr4: 14191583-14194256 Arabidopsis thaliana
AT4G28720 1.0kb upstream 1.0kb upstream 1000 false Chr4: 14191583-14192582 Arabidopsis thaliana
AT4G28720 1.0kb downstream 1.0kb downstream 2674 true Chr4: 14192583-14195256 Arabidopsis thaliana
AT4G28720 1.0kb downstream 1.0kb downstream 1000 false Chr4: 14194257-14195256 Arabidopsis thaliana
AT4G28720 2.0kb upstream 2.0kb upstream 3674 true Chr4: 14190583-14194256 Arabidopsis thaliana
AT4G28720 2.0kb upstream 2.0kb upstream 2000 false Chr4: 14190583-14192582 Arabidopsis thaliana
AT4G28720 2.0kb downstream 2.0kb downstream 3674 true Chr4: 14192583-14196256 Arabidopsis thaliana
AT4G28720 2.0kb downstream 2.0kb downstream 2000 false Chr4: 14194257-14196256 Arabidopsis thaliana
AT4G28720 5.0kb upstream 5.0kb upstream 6674 true Chr4: 14187583-14194256 Arabidopsis thaliana
AT4G28720 5.0kb upstream 5.0kb upstream 5000 false Chr4: 14187583-14192582 Arabidopsis thaliana
AT4G28720 5.0kb downstream 5.0kb downstream 6674 true Chr4: 14192583-14199256 Arabidopsis thaliana
AT4G28720 5.0kb downstream 5.0kb downstream 5000 false Chr4: 14194257-14199256 Arabidopsis thaliana
AT4G28720 10.0kb upstream 10.0kb upstream 11674 true Chr4: 14182583-14194256 Arabidopsis thaliana
AT4G28720 10.0kb upstream 10.0kb upstream 10000 false Chr4: 14182583-14192582 Arabidopsis thaliana
AT4G28720 10.0kb downstream 10.0kb downstream 11674 true Chr4: 14192583-14204256 Arabidopsis thaliana
AT4G28720 10.0kb downstream 10.0kb downstream 10000 false Chr4: 14194257-14204256 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363996 5261 Brassicaceae View MSA
123831660 5264 Brassicales-Malvales View MSA
124346483 5266 SBM View MSA
124244542 5268 Malvidae View MSA
124062448 5270 Rosid View MSA
123751619 5271 Pentapetalae View MSA
122797534 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.182     Low Low
cufflinks 1.141        
cufflinks 0.452        
cufflinks 3.14       High
cufflinks 0.798        
cufflinks 1.663        

0 Strain