Gene : HCF153 A. thaliana TAIR10
Primary Identifier:  ? AT4G31560 Defline:  high chlorophyll fluorescence 153
Genomic Order:  3208 Name:  ? AT4G31560
Secondary Identifier:  ? PAC:19648391
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G31560 0.5kb upstream 0.5kb upstream 1541 true Chr4: 15294701-15296241 Arabidopsis thaliana
AT4G31560 0.5kb upstream 0.5kb upstream 500 false Chr4: 15294701-15295200 Arabidopsis thaliana
AT4G31560 0.5kb downstream 0.5kb downstream 1541 true Chr4: 15295201-15296741 Arabidopsis thaliana
AT4G31560 0.5kb downstream 0.5kb downstream 500 false Chr4: 15296242-15296741 Arabidopsis thaliana
AT4G31560 1.0kb upstream 1.0kb upstream 2041 true Chr4: 15294201-15296241 Arabidopsis thaliana
AT4G31560 1.0kb upstream 1.0kb upstream 1000 false Chr4: 15294201-15295200 Arabidopsis thaliana
AT4G31560 1.0kb downstream 1.0kb downstream 2041 true Chr4: 15295201-15297241 Arabidopsis thaliana
AT4G31560 1.0kb downstream 1.0kb downstream 1000 false Chr4: 15296242-15297241 Arabidopsis thaliana
AT4G31560 2.0kb upstream 2.0kb upstream 3041 true Chr4: 15293201-15296241 Arabidopsis thaliana
AT4G31560 2.0kb upstream 2.0kb upstream 2000 false Chr4: 15293201-15295200 Arabidopsis thaliana
AT4G31560 2.0kb downstream 2.0kb downstream 3041 true Chr4: 15295201-15298241 Arabidopsis thaliana
AT4G31560 2.0kb downstream 2.0kb downstream 2000 false Chr4: 15296242-15298241 Arabidopsis thaliana
AT4G31560 5.0kb upstream 5.0kb upstream 6041 true Chr4: 15290201-15296241 Arabidopsis thaliana
AT4G31560 5.0kb upstream 5.0kb upstream 5000 false Chr4: 15290201-15295200 Arabidopsis thaliana
AT4G31560 5.0kb downstream 5.0kb downstream 6041 true Chr4: 15295201-15301241 Arabidopsis thaliana
AT4G31560 5.0kb downstream 5.0kb downstream 5000 false Chr4: 15296242-15301241 Arabidopsis thaliana
AT4G31560 10.0kb upstream 10.0kb upstream 11041 true Chr4: 15285201-15296241 Arabidopsis thaliana
AT4G31560 10.0kb upstream 10.0kb upstream 10000 false Chr4: 15285201-15295200 Arabidopsis thaliana
AT4G31560 10.0kb downstream 10.0kb downstream 11041 true Chr4: 15295201-15306241 Arabidopsis thaliana
AT4G31560 10.0kb downstream 10.0kb downstream 10000 false Chr4: 15296242-15306241 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366260 5261 Brassicaceae View MSA
123833784 5264 Brassicales-Malvales View MSA
124347444 5266 SBM View MSA
124237934 5268 Malvidae View MSA
124068196 5270 Rosid View MSA
123749169 5271 Pentapetalae View MSA
122787742 5272 Eudicot View MSA
122044964 5273 Angiosperm View MSA
121310373 5274 Embryophyte View MSA
123347874 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.652     High  
cufflinks 9.378        
cufflinks 36.808     High  
cufflinks 9.383        
cufflinks 36.133     High  
cufflinks 6.183       Low

0 Strain