Gene : PBA1 A. thaliana TAIR10
Primary Identifier:  ? AT4G31300 Defline:  (1 of 1) K02738 - 20S proteasome subunit beta 1 (PSMB6)
Genomic Order:  3178 Name:  ? AT4G31300
Secondary Identifier:  ? PAC:19646330
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G31300 0.5kb upstream 0.5kb upstream 2970 true Chr4: 15188248-15191217 Arabidopsis thaliana
AT4G31300 0.5kb upstream 0.5kb upstream 500 false Chr4: 15188248-15188747 Arabidopsis thaliana
AT4G31300 0.5kb downstream 0.5kb downstream 2970 true Chr4: 15188748-15191717 Arabidopsis thaliana
AT4G31300 0.5kb downstream 0.5kb downstream 500 false Chr4: 15191218-15191717 Arabidopsis thaliana
AT4G31300 1.0kb upstream 1.0kb upstream 3470 true Chr4: 15187748-15191217 Arabidopsis thaliana
AT4G31300 1.0kb upstream 1.0kb upstream 1000 false Chr4: 15187748-15188747 Arabidopsis thaliana
AT4G31300 1.0kb downstream 1.0kb downstream 3470 true Chr4: 15188748-15192217 Arabidopsis thaliana
AT4G31300 1.0kb downstream 1.0kb downstream 1000 false Chr4: 15191218-15192217 Arabidopsis thaliana
AT4G31300 2.0kb upstream 2.0kb upstream 4470 true Chr4: 15186748-15191217 Arabidopsis thaliana
AT4G31300 2.0kb upstream 2.0kb upstream 2000 false Chr4: 15186748-15188747 Arabidopsis thaliana
AT4G31300 2.0kb downstream 2.0kb downstream 4470 true Chr4: 15188748-15193217 Arabidopsis thaliana
AT4G31300 2.0kb downstream 2.0kb downstream 2000 false Chr4: 15191218-15193217 Arabidopsis thaliana
AT4G31300 5.0kb upstream 5.0kb upstream 7470 true Chr4: 15183748-15191217 Arabidopsis thaliana
AT4G31300 5.0kb upstream 5.0kb upstream 5000 false Chr4: 15183748-15188747 Arabidopsis thaliana
AT4G31300 5.0kb downstream 5.0kb downstream 7470 true Chr4: 15188748-15196217 Arabidopsis thaliana
AT4G31300 5.0kb downstream 5.0kb downstream 5000 false Chr4: 15191218-15196217 Arabidopsis thaliana
AT4G31300 10.0kb upstream 10.0kb upstream 12470 true Chr4: 15178748-15191217 Arabidopsis thaliana
AT4G31300 10.0kb upstream 10.0kb upstream 10000 false Chr4: 15178748-15188747 Arabidopsis thaliana
AT4G31300 10.0kb downstream 10.0kb downstream 12470 true Chr4: 15188748-15201217 Arabidopsis thaliana
AT4G31300 10.0kb downstream 10.0kb downstream 10000 false Chr4: 15191218-15201217 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377450 5261 Brassicaceae View MSA
123835420 5264 Brassicales-Malvales View MSA
124338550 5266 SBM View MSA
124242459 5268 Malvidae View MSA
124072118 5270 Rosid View MSA
123739837 5271 Pentapetalae View MSA
122787112 5272 Eudicot View MSA
122042540 5273 Angiosperm View MSA
121348107 5274 Embryophyte View MSA
123423963 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.749       Low
cufflinks 11.383        
cufflinks 10.791        
cufflinks 13.123        
cufflinks 12.364        
cufflinks 13.861       High

0 Strain