Gene : AT4G31180 A. thaliana TAIR10
Defline:  (1 of 3) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  3167
Name:  ? AT4G31180 Secondary Identifier:  ? PAC:19645303
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G31180 0.5kb upstream 0.5kb upstream 4211 true Chr4: 15155379-15159589 Arabidopsis thaliana
AT4G31180 0.5kb upstream 0.5kb upstream 500 false Chr4: 15155379-15155878 Arabidopsis thaliana
AT4G31180 0.5kb downstream 0.5kb downstream 4211 true Chr4: 15155879-15160089 Arabidopsis thaliana
AT4G31180 0.5kb downstream 0.5kb downstream 500 false Chr4: 15159590-15160089 Arabidopsis thaliana
AT4G31180 1.0kb upstream 1.0kb upstream 4711 true Chr4: 15154879-15159589 Arabidopsis thaliana
AT4G31180 1.0kb upstream 1.0kb upstream 1000 false Chr4: 15154879-15155878 Arabidopsis thaliana
AT4G31180 1.0kb downstream 1.0kb downstream 4711 true Chr4: 15155879-15160589 Arabidopsis thaliana
AT4G31180 1.0kb downstream 1.0kb downstream 1000 false Chr4: 15159590-15160589 Arabidopsis thaliana
AT4G31180 2.0kb upstream 2.0kb upstream 5711 true Chr4: 15153879-15159589 Arabidopsis thaliana
AT4G31180 2.0kb upstream 2.0kb upstream 2000 false Chr4: 15153879-15155878 Arabidopsis thaliana
AT4G31180 2.0kb downstream 2.0kb downstream 5711 true Chr4: 15155879-15161589 Arabidopsis thaliana
AT4G31180 2.0kb downstream 2.0kb downstream 2000 false Chr4: 15159590-15161589 Arabidopsis thaliana
AT4G31180 5.0kb upstream 5.0kb upstream 8711 true Chr4: 15150879-15159589 Arabidopsis thaliana
AT4G31180 5.0kb upstream 5.0kb upstream 5000 false Chr4: 15150879-15155878 Arabidopsis thaliana
AT4G31180 5.0kb downstream 5.0kb downstream 8711 true Chr4: 15155879-15164589 Arabidopsis thaliana
AT4G31180 5.0kb downstream 5.0kb downstream 5000 false Chr4: 15159590-15164589 Arabidopsis thaliana
AT4G31180 10.0kb upstream 10.0kb upstream 13711 true Chr4: 15145879-15159589 Arabidopsis thaliana
AT4G31180 10.0kb upstream 10.0kb upstream 10000 false Chr4: 15145879-15155878 Arabidopsis thaliana
AT4G31180 10.0kb downstream 10.0kb downstream 13711 true Chr4: 15155879-15169589 Arabidopsis thaliana
AT4G31180 10.0kb downstream 10.0kb downstream 10000 false Chr4: 15159590-15169589 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373469 5261 Brassicaceae View MSA
123830124 5264 Brassicales-Malvales View MSA
124340774 5266 SBM View MSA
124240572 5268 Malvidae View MSA
124066804 5270 Rosid View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.303        
cufflinks 21.356        
cufflinks 15.527       Low
cufflinks 23.334       High
cufflinks 17.084        
cufflinks 20.804        

0 Strain