Gene : CCD8 A. thaliana TAIR10
Primary Identifier:  ? AT4G32810 Defline:  (1 of 1) 1.13.11.69//1.13.11.70 - Carlactone synthase // All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8
Genomic Order:  3347 Name:  ? AT4G32810
Secondary Identifier:  ? PAC:19648520
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7101 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G32810 0.5kb upstream 0.5kb upstream 3758 true Chr4: 15827728-15831485 Arabidopsis thaliana
AT4G32810 0.5kb upstream 0.5kb upstream 500 false Chr4: 15827728-15828227 Arabidopsis thaliana
AT4G32810 0.5kb downstream 0.5kb downstream 3758 true Chr4: 15828228-15831985 Arabidopsis thaliana
AT4G32810 0.5kb downstream 0.5kb downstream 500 false Chr4: 15831486-15831985 Arabidopsis thaliana
AT4G32810 1.0kb upstream 1.0kb upstream 4258 true Chr4: 15827228-15831485 Arabidopsis thaliana
AT4G32810 1.0kb upstream 1.0kb upstream 1000 false Chr4: 15827228-15828227 Arabidopsis thaliana
AT4G32810 1.0kb downstream 1.0kb downstream 4258 true Chr4: 15828228-15832485 Arabidopsis thaliana
AT4G32810 1.0kb downstream 1.0kb downstream 1000 false Chr4: 15831486-15832485 Arabidopsis thaliana
AT4G32810 2.0kb upstream 2.0kb upstream 5258 true Chr4: 15826228-15831485 Arabidopsis thaliana
AT4G32810 2.0kb upstream 2.0kb upstream 2000 false Chr4: 15826228-15828227 Arabidopsis thaliana
AT4G32810 2.0kb downstream 2.0kb downstream 5258 true Chr4: 15828228-15833485 Arabidopsis thaliana
AT4G32810 2.0kb downstream 2.0kb downstream 2000 false Chr4: 15831486-15833485 Arabidopsis thaliana
AT4G32810 5.0kb upstream 5.0kb upstream 8258 true Chr4: 15823228-15831485 Arabidopsis thaliana
AT4G32810 5.0kb upstream 5.0kb upstream 5000 false Chr4: 15823228-15828227 Arabidopsis thaliana
AT4G32810 5.0kb downstream 5.0kb downstream 8258 true Chr4: 15828228-15836485 Arabidopsis thaliana
AT4G32810 5.0kb downstream 5.0kb downstream 5000 false Chr4: 15831486-15836485 Arabidopsis thaliana
AT4G32810 10.0kb upstream 10.0kb upstream 13258 true Chr4: 15818228-15831485 Arabidopsis thaliana
AT4G32810 10.0kb upstream 10.0kb upstream 10000 false Chr4: 15818228-15828227 Arabidopsis thaliana
AT4G32810 10.0kb downstream 10.0kb downstream 13258 true Chr4: 15828228-15841485 Arabidopsis thaliana
AT4G32810 10.0kb downstream 10.0kb downstream 10000 false Chr4: 15831486-15841485 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370385 5261 Brassicaceae View MSA
123840885 5264 Brassicales-Malvales View MSA
124343885 5266 SBM View MSA
124238264 5268 Malvidae View MSA
124065320 5270 Rosid View MSA
123738795 5271 Pentapetalae View MSA
122791259 5272 Eudicot View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.683        
cufflinks 25.632        
cufflinks 0.478       Low
cufflinks 12.079        
cufflinks 1.812        
cufflinks 29.961     High High

0 Strain