Gene : AT4G31880 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12663:SF3 - ASPARTYL BETA-HYDROXYLASE N-TERMINAL REGION DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  3243
Name:  ? AT4G31880 Secondary Identifier:  ? PAC:19647745
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G31880 0.5kb upstream 0.5kb upstream 5684 true Chr4: 15419082-15424765 Arabidopsis thaliana
AT4G31880 0.5kb upstream 0.5kb upstream 500 false Chr4: 15424266-15424765 Arabidopsis thaliana
AT4G31880 0.5kb downstream 0.5kb downstream 5684 true Chr4: 15418582-15424265 Arabidopsis thaliana
AT4G31880 0.5kb downstream 0.5kb downstream 500 false Chr4: 15418582-15419081 Arabidopsis thaliana
AT4G31880 1.0kb upstream 1.0kb upstream 6184 true Chr4: 15419082-15425265 Arabidopsis thaliana
AT4G31880 1.0kb upstream 1.0kb upstream 1000 false Chr4: 15424266-15425265 Arabidopsis thaliana
AT4G31880 1.0kb downstream 1.0kb downstream 6184 true Chr4: 15418082-15424265 Arabidopsis thaliana
AT4G31880 1.0kb downstream 1.0kb downstream 1000 false Chr4: 15418082-15419081 Arabidopsis thaliana
AT4G31880 2.0kb upstream 2.0kb upstream 7184 true Chr4: 15419082-15426265 Arabidopsis thaliana
AT4G31880 2.0kb upstream 2.0kb upstream 2000 false Chr4: 15424266-15426265 Arabidopsis thaliana
AT4G31880 2.0kb downstream 2.0kb downstream 7184 true Chr4: 15417082-15424265 Arabidopsis thaliana
AT4G31880 2.0kb downstream 2.0kb downstream 2000 false Chr4: 15417082-15419081 Arabidopsis thaliana
AT4G31880 5.0kb upstream 5.0kb upstream 10184 true Chr4: 15419082-15429265 Arabidopsis thaliana
AT4G31880 5.0kb upstream 5.0kb upstream 5000 false Chr4: 15424266-15429265 Arabidopsis thaliana
AT4G31880 5.0kb downstream 5.0kb downstream 10184 true Chr4: 15414082-15424265 Arabidopsis thaliana
AT4G31880 5.0kb downstream 5.0kb downstream 5000 false Chr4: 15414082-15419081 Arabidopsis thaliana
AT4G31880 10.0kb upstream 10.0kb upstream 15184 true Chr4: 15419082-15434265 Arabidopsis thaliana
AT4G31880 10.0kb upstream 10.0kb upstream 10000 false Chr4: 15424266-15434265 Arabidopsis thaliana
AT4G31880 10.0kb downstream 10.0kb downstream 15184 true Chr4: 15409082-15424265 Arabidopsis thaliana
AT4G31880 10.0kb downstream 10.0kb downstream 10000 false Chr4: 15409082-15419081 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361685 5261 Brassicaceae View MSA
123837273 5264 Brassicales-Malvales View MSA
124336599 5266 SBM View MSA
124242062 5268 Malvidae View MSA
124073544 5270 Rosid View MSA
123751665 5271 Pentapetalae View MSA
122793321 5272 Eudicot View MSA
122042349 5273 Angiosperm View MSA
121309949 5274 Embryophyte View MSA
123426721 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.208        
cufflinks 7.748        
cufflinks 4.495       Low
cufflinks 8.596        
cufflinks 4.659       Low
cufflinks 8.765        

0 Strain