Gene : AT4G33890 A. thaliana TAIR10
Defline:  (1 of 5) PF12767 - Transcriptional regulator of RNA polII, SAGA, subunit (SAGA-Tad1) Genomic Order:  3462
Name:  ? AT4G33890 Secondary Identifier:  ? PAC:19647264
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G33890 0.5kb upstream 0.5kb upstream 2237 true Chr4: 16249143-16251379 Arabidopsis thaliana
AT4G33890 0.5kb upstream 0.5kb upstream 500 false Chr4: 16249143-16249642 Arabidopsis thaliana
AT4G33890 0.5kb downstream 0.5kb downstream 2237 true Chr4: 16249643-16251879 Arabidopsis thaliana
AT4G33890 0.5kb downstream 0.5kb downstream 500 false Chr4: 16251380-16251879 Arabidopsis thaliana
AT4G33890 1.0kb upstream 1.0kb upstream 2737 true Chr4: 16248643-16251379 Arabidopsis thaliana
AT4G33890 1.0kb upstream 1.0kb upstream 1000 false Chr4: 16248643-16249642 Arabidopsis thaliana
AT4G33890 1.0kb downstream 1.0kb downstream 2737 true Chr4: 16249643-16252379 Arabidopsis thaliana
AT4G33890 1.0kb downstream 1.0kb downstream 1000 false Chr4: 16251380-16252379 Arabidopsis thaliana
AT4G33890 2.0kb upstream 2.0kb upstream 3737 true Chr4: 16247643-16251379 Arabidopsis thaliana
AT4G33890 2.0kb upstream 2.0kb upstream 2000 false Chr4: 16247643-16249642 Arabidopsis thaliana
AT4G33890 2.0kb downstream 2.0kb downstream 3737 true Chr4: 16249643-16253379 Arabidopsis thaliana
AT4G33890 2.0kb downstream 2.0kb downstream 2000 false Chr4: 16251380-16253379 Arabidopsis thaliana
AT4G33890 5.0kb upstream 5.0kb upstream 6737 true Chr4: 16244643-16251379 Arabidopsis thaliana
AT4G33890 5.0kb upstream 5.0kb upstream 5000 false Chr4: 16244643-16249642 Arabidopsis thaliana
AT4G33890 5.0kb downstream 5.0kb downstream 6737 true Chr4: 16249643-16256379 Arabidopsis thaliana
AT4G33890 5.0kb downstream 5.0kb downstream 5000 false Chr4: 16251380-16256379 Arabidopsis thaliana
AT4G33890 10.0kb upstream 10.0kb upstream 11737 true Chr4: 16239643-16251379 Arabidopsis thaliana
AT4G33890 10.0kb upstream 10.0kb upstream 10000 false Chr4: 16239643-16249642 Arabidopsis thaliana
AT4G33890 10.0kb downstream 10.0kb downstream 11737 true Chr4: 16249643-16261379 Arabidopsis thaliana
AT4G33890 10.0kb downstream 10.0kb downstream 10000 false Chr4: 16251380-16261379 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362161 5261 Brassicaceae View MSA
123834752 5264 Brassicales-Malvales View MSA
124345526 5266 SBM View MSA
124251917 5268 Malvidae View MSA
124060712 5270 Rosid View MSA
123743282 5271 Pentapetalae View MSA
122790089 5272 Eudicot View MSA
122050052 5273 Angiosperm View MSA
121311708 5274 Embryophyte View MSA
123348971 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.476        
cufflinks 11.21        
cufflinks 8.824        
cufflinks 11.685        
cufflinks 8.101       Low
cufflinks 10.622        

0 Strain