Gene : LAP5 A. thaliana TAIR10
Primary Identifier:  ? AT4G34850 Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED
Genomic Order:  3569 Name:  ? AT4G34850
Secondary Identifier:  ? PAC:19648327
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G34850 0.5kb upstream 0.5kb upstream 2017 true Chr4: 16607813-16609829 Arabidopsis thaliana
AT4G34850 0.5kb upstream 0.5kb upstream 500 false Chr4: 16607813-16608312 Arabidopsis thaliana
AT4G34850 0.5kb downstream 0.5kb downstream 2017 true Chr4: 16608313-16610329 Arabidopsis thaliana
AT4G34850 0.5kb downstream 0.5kb downstream 500 false Chr4: 16609830-16610329 Arabidopsis thaliana
AT4G34850 1.0kb upstream 1.0kb upstream 2517 true Chr4: 16607313-16609829 Arabidopsis thaliana
AT4G34850 1.0kb upstream 1.0kb upstream 1000 false Chr4: 16607313-16608312 Arabidopsis thaliana
AT4G34850 1.0kb downstream 1.0kb downstream 2517 true Chr4: 16608313-16610829 Arabidopsis thaliana
AT4G34850 1.0kb downstream 1.0kb downstream 1000 false Chr4: 16609830-16610829 Arabidopsis thaliana
AT4G34850 2.0kb upstream 2.0kb upstream 3517 true Chr4: 16606313-16609829 Arabidopsis thaliana
AT4G34850 2.0kb upstream 2.0kb upstream 2000 false Chr4: 16606313-16608312 Arabidopsis thaliana
AT4G34850 2.0kb downstream 2.0kb downstream 3517 true Chr4: 16608313-16611829 Arabidopsis thaliana
AT4G34850 2.0kb downstream 2.0kb downstream 2000 false Chr4: 16609830-16611829 Arabidopsis thaliana
AT4G34850 5.0kb upstream 5.0kb upstream 6517 true Chr4: 16603313-16609829 Arabidopsis thaliana
AT4G34850 5.0kb upstream 5.0kb upstream 5000 false Chr4: 16603313-16608312 Arabidopsis thaliana
AT4G34850 5.0kb downstream 5.0kb downstream 6517 true Chr4: 16608313-16614829 Arabidopsis thaliana
AT4G34850 5.0kb downstream 5.0kb downstream 5000 false Chr4: 16609830-16614829 Arabidopsis thaliana
AT4G34850 10.0kb upstream 10.0kb upstream 11517 true Chr4: 16598313-16609829 Arabidopsis thaliana
AT4G34850 10.0kb upstream 10.0kb upstream 10000 false Chr4: 16598313-16608312 Arabidopsis thaliana
AT4G34850 10.0kb downstream 10.0kb downstream 11517 true Chr4: 16608313-16619829 Arabidopsis thaliana
AT4G34850 10.0kb downstream 10.0kb downstream 10000 false Chr4: 16609830-16619829 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367614 5261 Brassicaceae View MSA
123828029 5264 Brassicales-Malvales View MSA
124342299 5266 SBM View MSA
124240993 5268 Malvidae View MSA
124063959 5270 Rosid View MSA
123736714 5271 Pentapetalae View MSA
122788702 5272 Eudicot View MSA
122042999 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.432       High
cufflinks 0.17     Low  
cufflinks 0.127     Low  
cufflinks 0.082     Low Low
cufflinks 0.434       High
cufflinks 0.125     Low  

0 Strain