Gene : SSR16 A. thaliana TAIR10
Primary Identifier:  ? AT4G34620 Defline:  (1 of 1) PTHR12919//PTHR12919:SF23 - 30S RIBOSOMAL PROTEIN S16 // SUBFAMILY NOT NAMED
Genomic Order:  3547 Name:  ? AT4G34620
Secondary Identifier:  ? PAC:19645753
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G34620 0.5kb upstream 0.5kb upstream 1817 true Chr4: 16534855-16536671 Arabidopsis thaliana
AT4G34620 0.5kb upstream 0.5kb upstream 500 false Chr4: 16536172-16536671 Arabidopsis thaliana
AT4G34620 0.5kb downstream 0.5kb downstream 1817 true Chr4: 16534355-16536171 Arabidopsis thaliana
AT4G34620 0.5kb downstream 0.5kb downstream 500 false Chr4: 16534355-16534854 Arabidopsis thaliana
AT4G34620 1.0kb upstream 1.0kb upstream 2317 true Chr4: 16534855-16537171 Arabidopsis thaliana
AT4G34620 1.0kb upstream 1.0kb upstream 1000 false Chr4: 16536172-16537171 Arabidopsis thaliana
AT4G34620 1.0kb downstream 1.0kb downstream 2317 true Chr4: 16533855-16536171 Arabidopsis thaliana
AT4G34620 1.0kb downstream 1.0kb downstream 1000 false Chr4: 16533855-16534854 Arabidopsis thaliana
AT4G34620 2.0kb upstream 2.0kb upstream 3317 true Chr4: 16534855-16538171 Arabidopsis thaliana
AT4G34620 2.0kb upstream 2.0kb upstream 2000 false Chr4: 16536172-16538171 Arabidopsis thaliana
AT4G34620 2.0kb downstream 2.0kb downstream 3317 true Chr4: 16532855-16536171 Arabidopsis thaliana
AT4G34620 2.0kb downstream 2.0kb downstream 2000 false Chr4: 16532855-16534854 Arabidopsis thaliana
AT4G34620 5.0kb upstream 5.0kb upstream 6317 true Chr4: 16534855-16541171 Arabidopsis thaliana
AT4G34620 5.0kb upstream 5.0kb upstream 5000 false Chr4: 16536172-16541171 Arabidopsis thaliana
AT4G34620 5.0kb downstream 5.0kb downstream 6317 true Chr4: 16529855-16536171 Arabidopsis thaliana
AT4G34620 5.0kb downstream 5.0kb downstream 5000 false Chr4: 16529855-16534854 Arabidopsis thaliana
AT4G34620 10.0kb upstream 10.0kb upstream 11317 true Chr4: 16534855-16546171 Arabidopsis thaliana
AT4G34620 10.0kb upstream 10.0kb upstream 10000 false Chr4: 16536172-16546171 Arabidopsis thaliana
AT4G34620 10.0kb downstream 10.0kb downstream 11317 true Chr4: 16524855-16536171 Arabidopsis thaliana
AT4G34620 10.0kb downstream 10.0kb downstream 10000 false Chr4: 16524855-16534854 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121511048 5273 Angiosperm View MSA
122371580 5261 Brassicaceae View MSA
123800192 5264 Brassicales-Malvales View MSA
124297636 5266 SBM View MSA
124149470 5268 Malvidae View MSA
123875275 5270 Rosid View MSA
123459126 5271 Pentapetalae View MSA
122494521 5272 Eudicot View MSA
120784116 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 280.29     High  
cufflinks 51.73     High  
cufflinks 299.34     High High
cufflinks 40.309     High  
cufflinks 213.974     High  
cufflinks 38.765     High Low

0 Strain