Gene : GGPS1 A. thaliana TAIR10
Primary Identifier:  ? AT4G36810 Defline:  (1 of 12) 2.5.1.1//2.5.1.10//2.5.1.29 - Dimethylallyltranstransferase / Prenyltransferase // (2E,6E)-farnesyl diphosphate synthase / Geranyltranstransferase // Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase
Genomic Order:  3776 Name:  ? AT4G36810
Secondary Identifier:  ? PAC:19647629
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5120 Arabidopsis thaliana pathologic  
Athaliana PWY-5122 Arabidopsis thaliana pathologic  
Athaliana PWY-5123 Arabidopsis thaliana pathologic  
Athaliana PWY-5910 Arabidopsis thaliana pathologic  
Athaliana PWY-7709 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G36810 0.5kb upstream 0.5kb upstream 1992 true Chr4: 17342874-17344865 Arabidopsis thaliana
AT4G36810 0.5kb upstream 0.5kb upstream 500 false Chr4: 17342874-17343373 Arabidopsis thaliana
AT4G36810 0.5kb downstream 0.5kb downstream 1992 true Chr4: 17343374-17345365 Arabidopsis thaliana
AT4G36810 0.5kb downstream 0.5kb downstream 500 false Chr4: 17344866-17345365 Arabidopsis thaliana
AT4G36810 1.0kb upstream 1.0kb upstream 2492 true Chr4: 17342374-17344865 Arabidopsis thaliana
AT4G36810 1.0kb upstream 1.0kb upstream 1000 false Chr4: 17342374-17343373 Arabidopsis thaliana
AT4G36810 1.0kb downstream 1.0kb downstream 2492 true Chr4: 17343374-17345865 Arabidopsis thaliana
AT4G36810 1.0kb downstream 1.0kb downstream 1000 false Chr4: 17344866-17345865 Arabidopsis thaliana
AT4G36810 2.0kb upstream 2.0kb upstream 3492 true Chr4: 17341374-17344865 Arabidopsis thaliana
AT4G36810 2.0kb upstream 2.0kb upstream 2000 false Chr4: 17341374-17343373 Arabidopsis thaliana
AT4G36810 2.0kb downstream 2.0kb downstream 3492 true Chr4: 17343374-17346865 Arabidopsis thaliana
AT4G36810 2.0kb downstream 2.0kb downstream 2000 false Chr4: 17344866-17346865 Arabidopsis thaliana
AT4G36810 5.0kb upstream 5.0kb upstream 6492 true Chr4: 17338374-17344865 Arabidopsis thaliana
AT4G36810 5.0kb upstream 5.0kb upstream 5000 false Chr4: 17338374-17343373 Arabidopsis thaliana
AT4G36810 5.0kb downstream 5.0kb downstream 6492 true Chr4: 17343374-17349865 Arabidopsis thaliana
AT4G36810 5.0kb downstream 5.0kb downstream 5000 false Chr4: 17344866-17349865 Arabidopsis thaliana
AT4G36810 10.0kb upstream 10.0kb upstream 11492 true Chr4: 17333374-17344865 Arabidopsis thaliana
AT4G36810 10.0kb upstream 10.0kb upstream 10000 false Chr4: 17333374-17343373 Arabidopsis thaliana
AT4G36810 10.0kb downstream 10.0kb downstream 11492 true Chr4: 17343374-17354865 Arabidopsis thaliana
AT4G36810 10.0kb downstream 10.0kb downstream 10000 false Chr4: 17344866-17354865 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367491 5261 Brassicaceae View MSA
123840424 5264 Brassicales-Malvales View MSA
124338716 5266 SBM View MSA
124237101 5268 Malvidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 67.975     High High
cufflinks 14.9       Low
cufflinks 60.604     High  
cufflinks 17.131        
cufflinks 53.327     High  
cufflinks 16.371        

0 Strain